PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
PHvul07G0006410.1 Alkaloid T3O medium pass
PHvul07G0008700.1 Alkaloid T3O medium borderline
PHvul07G0010730.1 Alkaloid T3O medium borderline
PHvul07G0016510.1 Alkaloid T3O medium pass
PHvul07G0021550.1 Alkaloid T3O medium pass
PHvul07G0024320.1 Alkaloid T3O medium borderline
PHvul08G0002950.1 Alkaloid T3O medium pass
PHvul08G0002950.2 Alkaloid T3O medium pass
PHvul08G0003580.1 Alkaloid T3O medium pass
PHvul08G0003590.1 Alkaloid T3O medium pass
PHvul08G0005850.1 Alkaloid T3O medium pass
PHvul08G0012930.1 Alkaloid T3O medium borderline
PHvul08G0014690.1 Alkaloid T3O medium borderline
PHvul08G0015630.1 Alkaloid T3O medium pass
PHvul08G0015630.2 Alkaloid T3O medium pass
PHvul08G0022850.1 Alkaloid T3O medium pass
PHvul08G0023630.1 Alkaloid T3O medium pass
PHvul08G0026410.1 Alkaloid T3O low borderline
PHvul08G0027910.1 Alkaloid T3O medium borderline
PHvul09G0006060.1 Alkaloid T3O medium pass
PHvul09G0006060.2 Alkaloid T3O medium pass
PHvul09G0006240.1 Alkaloid T3O medium borderline
PHvul09G0006250.1 Alkaloid T3O medium borderline
PHvul09G0006260.1 Alkaloid T3O medium borderline
PHvul09G0006270.1 Alkaloid T3O medium borderline
PHvul09G0017620.1 Alkaloid T3O medium borderline
PHvul09G0024990.1 Alkaloid T3O medium borderline
PHvul09G0025000.1 Alkaloid T3O medium borderline
PHvul10G0001090.1 Alkaloid T3O medium borderline
PHvul10G0001100.1 Alkaloid T3O medium borderline
PHvul10G0002160.1 Alkaloid T3O medium borderline
PHvul10G0006950.1 Alkaloid T3O medium borderline
PHvul10G0007020.1 Alkaloid T3O low borderline
PHvul10G0007080.1 Alkaloid T3O medium borderline
PHvul10G0007190.1 Alkaloid T3O medium borderline
PHvul10G0008050.1 Alkaloid T3O medium borderline
PHvul10G0012940.1 Alkaloid T3O medium borderline
PHvul10G0013160.1 Alkaloid T3O low borderline
PHvul10G0014050.1 Alkaloid T3O medium pass
PHvul11G0003070.1 Alkaloid T3O medium pass
PHvul11G0007020.1 Alkaloid T3O medium borderline
PHvul11G0009250.1 Alkaloid T3O medium pass
PHvul11G0021310.1 Alkaloid T3O medium borderline