PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
PHvul05G0005850.1 Alkaloid H6H medium borderline
PHvul05G0006040.1 Alkaloid H6H medium borderline
PHvul05G0015580.1 Alkaloid H6H low borderline
PHvul06G0012010.1 Alkaloid H6H medium borderline
PHvul07G0016020.1 Alkaloid H6H low borderline
PHvul07G0016020.2 Alkaloid H6H low borderline
PHvul07G0016020.3 Alkaloid H6H low borderline
PHvul07G0017990.1 Alkaloid H6H medium borderline
PHvul07G0017990.2 Alkaloid H6H medium borderline
PHvul07G0019790.1 Alkaloid H6H low borderline
PHvul07G0023390.1 Alkaloid H6H low borderline
PHvul07G0023400.1 Alkaloid H6H low borderline
PHvul07G0023420.1 Alkaloid H6H low borderline
PHvul08G0002880.1 Alkaloid H6H medium borderline
PHvul08G0006470.1 Alkaloid H6H low borderline
PHvul08G0008680.1 Alkaloid H6H low borderline
PHvul08G0009420.1 Alkaloid H6H low borderline
PHvul08G0009420.2 Alkaloid H6H low borderline
PHvul08G0012580.2 Alkaloid H6H medium borderline
PHvul08G0012590.1 Alkaloid H6H medium borderline
PHvul08G0012590.2 Alkaloid H6H medium borderline
PHvul08G0012610.1 Alkaloid H6H medium borderline
PHvul08G0017930.1 Alkaloid H6H medium borderline
PHvul08G0017940.1 Alkaloid H6H medium borderline
PHvul08G0021810.2 Alkaloid H6H medium borderline
PHvul08G0022700.1 Alkaloid H6H low borderline
PHvul08G0022740.1 Alkaloid H6H medium borderline
PHvul09G0005360.1 Alkaloid H6H medium borderline
PHvul09G0010000.1 Alkaloid H6H low borderline
PHvul09G0010010.1 Alkaloid H6H low borderline
PHvul09G0010030.1 Alkaloid H6H medium pass
PHvul09G0010040.1 Alkaloid H6H medium pass
PHvul09G0013350.1 Alkaloid H6H medium borderline
PHvul09G0015940.1 Alkaloid H6H medium pass
PHvul09G0025200.1 Alkaloid H6H medium borderline
PHvul10G0014680.1 Alkaloid H6H low borderline
PHvul10G0015350.1 Alkaloid H6H low borderline
PHvul10G0015360.1 Alkaloid H6H low borderline
PHvul01G0003740.1 Alkaloid IO medium borderline
PHvul01G0003740.2 Alkaloid IO medium borderline
PHvul01G0013680.1 Alkaloid IO medium pass
PHvul01G0018330.1 Alkaloid IO medium borderline
PHvul01G0025960.1 Alkaloid IO medium borderline
PHvul02G0002260.1 Alkaloid IO low borderline
PHvul02G0009450.1 Alkaloid IO medium borderline
PHvul02G0012610.1 Alkaloid IO medium borderline
PHvul02G0015480.1 Alkaloid IO low borderline
PHvul03G0018790.1 Alkaloid IO medium borderline
PHvul03G0018790.2 Alkaloid IO medium borderline
PHvul03G0018790.3 Alkaloid IO medium borderline