PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PHvul02G0015080.3 Alkaloid MPO high pass
PHvul03G0004110.1 Alkaloid MPO low borderline
PHvul03G0004120.1 Alkaloid MPO low borderline
PHvul03G0006570.1 Alkaloid MPO medium pass
PHvul03G0010550.1 Alkaloid MPO medium pass
PHvul03G0020620.1 Alkaloid MPO high pass
PHvul03G0020620.2 Alkaloid MPO high pass
PHvul05G0002320.1 Alkaloid MPO medium pass
PHvul05G0002320.2 Alkaloid MPO medium pass
PHvul05G0002330.1 Alkaloid MPO medium pass
PHvul07G0005620.1 Alkaloid MPO medium pass
PHvul07G0005640.1 Alkaloid MPO medium pass
PHvul07G0005650.1 Alkaloid MPO high pass
PHvul07G0005660.1 Alkaloid MPO medium pass
PHvul09G0017880.1 Alkaloid MPO high pass
PHvul01G0021330.1 Alkaloid NCS medium borderline
PHvul02G0004910.1 Alkaloid NCS medium borderline
PHvul02G0005650.1 Alkaloid NCS medium borderline
PHvul03G0002090.1 Alkaloid NCS medium borderline
PHvul03G0002090.2 Alkaloid NCS medium borderline
PHvul03G0002090.3 Alkaloid NCS medium borderline
PHvul03G0002110.1 Alkaloid NCS medium borderline
PHvul03G0002120.1 Alkaloid NCS medium borderline
PHvul03G0002120.2 Alkaloid NCS medium borderline
PHvul03G0010960.1 Alkaloid NCS low borderline
PHvul04G0017500.1 Alkaloid NCS medium borderline
PHvul05G0008670.1 Alkaloid NCS medium borderline
PHvul07G0005180.1 Alkaloid NCS medium borderline
PHvul07G0012240.1 Alkaloid NCS medium borderline
PHvul08G0021770.1 Alkaloid NCS medium borderline
PHvul08G0021780.1 Alkaloid NCS medium borderline
PHvul09G0013540.1 Alkaloid NCS medium borderline
PHvul09G0025820.1 Alkaloid NCS low borderline
PHvul09G0025880.1 Alkaloid NCS low borderline
PHvul11G0001950.1 Alkaloid NCS medium pass
PHvul11G0015160.1 Alkaloid NCS low borderline
PHvul11G0015220.1 Alkaloid NCS medium pass
PHvul01G0004820.1 Alkaloid NMT low borderline
PHvul01G0004820.2 Alkaloid NMT low borderline
PHvul01G0004820.3 Alkaloid NMT low borderline
PHvul01G0004820.4 Alkaloid NMT low borderline
PHvul01G0010210.1 Alkaloid NMT medium pass
PHvul01G0016190.1 Alkaloid NMT medium pass
PHvul01G0016190.2 Alkaloid NMT medium pass
PHvul01G0016190.3 Alkaloid NMT medium pass
PHvul01G0020670.1 Alkaloid NMT low borderline
PHvul01G0021150.1 Alkaloid NMT medium pass
PHvul02G0000150.1 Alkaloid NMT low borderline
PHvul02G0001700.1 Alkaloid NMT medium pass
PHvul02G0002440.1 Alkaloid NMT medium pass