PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PHvul08G0001580.2 Alkaloid NMT medium pass
PHvul08G0001860.1 Alkaloid NMT medium pass
PHvul08G0004160.1 Alkaloid NMT medium borderline
PHvul08G0004170.1 Alkaloid NMT medium pass
PHvul08G0007230.1 Alkaloid NMT low borderline
PHvul08G0007230.2 Alkaloid NMT low borderline
PHvul08G0007230.3 Alkaloid NMT low borderline
PHvul08G0007230.4 Alkaloid NMT low borderline
PHvul08G0015490.1 Alkaloid NMT medium borderline
PHvul08G0015490.2 Alkaloid NMT medium borderline
PHvul08G0027420.1 Alkaloid NMT low borderline
PHvul08G0027420.2 Alkaloid NMT low borderline
PHvul08G0029110.1 Alkaloid NMT low borderline
PHvul09G0001980.1 Alkaloid NMT medium borderline
PHvul09G0002550.1 Alkaloid NMT low borderline
PHvul09G0005390.1 Alkaloid NMT low borderline
PHvul09G0010290.1 Alkaloid NMT medium pass
PHvul09G0013400.1 Alkaloid NMT medium pass
PHvul09G0013400.2 Alkaloid NMT medium pass
PHvul09G0015310.1 Alkaloid NMT medium pass
PHvul09G0015310.2 Alkaloid NMT medium pass
PHvul09G0020060.2 Alkaloid NMT low borderline
PHvul09G0020410.1 Alkaloid NMT medium pass
PHvul09G0024740.1 Alkaloid NMT medium pass
PHvul09G0025400.1 Alkaloid NMT medium pass
PHvul09G0025400.2 Alkaloid NMT medium pass
PHvul09G0025400.3 Alkaloid NMT medium pass
PHvul10G0006010.1 Alkaloid NMT medium borderline
PHvul10G0006010.2 Alkaloid NMT medium borderline
PHvul10G0006010.3 Alkaloid NMT medium borderline
PHvul10G0006010.4 Alkaloid NMT medium borderline
PHvul10G0011400.1 Alkaloid NMT low borderline
PHvul10G0011400.2 Alkaloid NMT low borderline
PHvul10G0011400.3 Alkaloid NMT low borderline
PHvul10G0016250.1 Alkaloid NMT medium pass
PHvul11G0000140.1 Alkaloid NMT low borderline
PHvul11G0001190.2 Alkaloid NMT medium borderline
PHvul11G0001730.1 Alkaloid NMT medium borderline
PHvul11G0001740.1 Alkaloid NMT medium borderline
PHvul11G0016850.1 Alkaloid NMT medium pass
PHvul11G0018910.1 Alkaloid NMT medium pass
PHvul11G0018910.2 Alkaloid NMT medium pass
PHvul04G0002450.1 Alkaloid ODC low borderline
PHvul09G0002020.1 Alkaloid ODC medium pass
PHvul09G0002030.1 Alkaloid ODC medium pass
PHvul01G0004530.1 Alkaloid PMT medium pass
PHvul01G0008720.1 Alkaloid PMT medium pass
PHvul01G0021620.1 Alkaloid PMT medium pass
PHvul01G0024280.1 Alkaloid PMT low borderline
PHvul02G0007250.1 Alkaloid PMT medium borderline