Phaseolus vulgaris (phaseolus_vulgaris)
Imported from atlas release summary for Phaseolus vulgaris.
2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4679
Family-Level Calls
BAHD
6.11%
C3'H/CYP98A
5.71%
C4H
5.36%
UFGT
4.25%
UGT
4.23%
7DLGT
4.15%
POD
4.04%
CYP76
3.4%
Other Families
62.75%
More Families (97)
4CL
153
3.27%
F3H
145
3.1%
T3O
143
3.06%
IFS
143
3.06%
NMT
105
2.24%
DWF4/CYP90B1
98
2.09%
F3'H/CYP75B
96
2.05%
STR
92
1.97%
CAD
89
1.9%
CODM/T6ODM
83
1.77%
CAS
80
1.71%
SMT1/SMT2/SMT3
71
1.52%
SGD
69
1.47%
H6H
65
1.39%
CYP71
65
1.39%
BR6OX2/CYP85A2
64
1.37%
TRI/TRII
62
1.33%
GES
49
1.05%
LAC
49
1.05%
TPS
48
1.03%
IFR
47
1.0%
CSE
46
0.98%
BBE
45
0.96%
COMT
44
0.94%
RAS
43
0.92%
ANR
42
0.9%
CYP90D1
40
0.85%
PYKS
37
0.79%
HCT
37
0.79%
IO
36
0.77%
16OMT
33
0.71%
7DLH
33
0.71%
T16H
32
0.68%
GS
31
0.66%
F3'5'H/CYP75A
31
0.66%
PMT
30
0.64%
FNS
29
0.62%
CCR
28
0.6%
G8O/G8H
25
0.53%
CYP51G1
23
0.49%
NCS
22
0.47%
SLS
20
0.43%
CNMT
19
0.41%
COR
19
0.41%
LAMT
18
0.38%
CYP80B1
18
0.38%
PAL
18
0.38%
BR6OX1/CYP85A1
18
0.38%
MPO
17
0.36%
CHS
17
0.36%
CCoAOMT
17
0.36%
TAT
17
0.36%
CPD/CYP90A1
17
0.36%
8HGO
16
0.34%
F5H/CYP84A
15
0.32%
ROT3/CYP90C1
15
0.32%
DFR
14
0.3%
SQS/FDFT1
13
0.28%
CHI
9
0.19%
SQE
9
0.19%
GGPPS
9
0.19%
ANS/LDOX
8
0.17%
HPPR
8
0.17%
DET2
8
0.17%
AACT
8
0.17%
SMO1/SMO2
7
0.15%
TDC
6
0.13%
ISY
6
0.13%
CPR
6
0.13%
HMGR
6
0.13%
DXS
6
0.13%
CYP719
5
0.11%
HMGS
5
0.11%
MVD
4
0.09%
ODC
3
0.06%
MVK
3
0.06%
FPPS
3
0.06%
TYDC_DDC
2
0.04%
FLS
2
0.04%
CPI1
2
0.04%
DWF1
2
0.04%
MCT/IspD
2
0.04%
DXR
2
0.04%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 572 | 20 | BAHD (235) | View species results |
| Alkaloid pathway | 473 | 20 | 7DLGT (83) | View species results |
| Phenylpropanoid pathway | 419 | 11 | POD (185) | View species results |
| Flavonoid pathway | 279 | 10 | UFGT (189) | View species results |
| Rosmarinic acid pathway | 138 | 7 | C4H (60) | View species results |
| Steroid pathway | 127 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1615 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 366 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PHvul08G0008790.1 | Alkaloid | PYKS | low | borderline |
| PHvul08G0015510.1 | Alkaloid | PYKS | high | pass |
| PHvul09G0002340.1 | Alkaloid | PYKS | low | borderline |
| PHvul09G0008690.1 | Alkaloid | PYKS | low | borderline |
| PHvul09G0013490.1 | Alkaloid | PYKS | high | pass |
| PHvul09G0020420.1 | Alkaloid | PYKS | low | borderline |
| PHvul09G0025500.1 | Alkaloid | PYKS | low | borderline |
| PHvul09G0026300.1 | Alkaloid | PYKS | low | borderline |
| PHvul11G0002790.1 | Alkaloid | PYKS | high | pass |
| PHvul11G0004130.1 | Alkaloid | PYKS | high | pass |
| PHvul11G0007100.1 | Alkaloid | PYKS | low | borderline |
| PHvulscaffold_300003370.1 | Alkaloid | PYKS | low | borderline |
| PHvul01G0007740.1 | Alkaloid | SGD | medium | pass |
| PHvul01G0007750.1 | Alkaloid | SGD | medium | pass |
| PHvul02G0010290.1 | Alkaloid | SGD | medium | pass |
| PHvul03G0004440.1 | Alkaloid | SGD | medium | pass |
| PHvul03G0007710.1 | Alkaloid | SGD | medium | pass |
| PHvul03G0007710.2 | Alkaloid | SGD | medium | pass |
| PHvul03G0007720.1 | Alkaloid | SGD | medium | pass |
| PHvul03G0011860.1 | Alkaloid | SGD | low | borderline |
| PHvul04G0010640.1 | Alkaloid | SGD | medium | pass |
| PHvul04G0015480.1 | Alkaloid | SGD | low | borderline |
| PHvul05G0002360.1 | Alkaloid | SGD | low | borderline |
| PHvul05G0002360.2 | Alkaloid | SGD | medium | pass |
| PHvul05G0002360.3 | Alkaloid | SGD | medium | pass |
| PHvul05G0002360.4 | Alkaloid | SGD | medium | pass |
| PHvul05G0002360.5 | Alkaloid | SGD | low | borderline |
| PHvul05G0002360.6 | Alkaloid | SGD | medium | pass |
| PHvul05G0003490.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0003870.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0003880.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0003880.2 | Alkaloid | SGD | medium | pass |
| PHvul05G0003880.3 | Alkaloid | SGD | medium | pass |
| PHvul05G0008280.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0008280.2 | Alkaloid | SGD | medium | pass |
| PHvul05G0008280.3 | Alkaloid | SGD | medium | pass |
| PHvul05G0008290.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014020.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014080.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014090.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014100.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014110.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014120.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014130.1 | Alkaloid | SGD | medium | pass |
| PHvul05G0014140.1 | Alkaloid | SGD | medium | pass |
| PHvul06G0001800.1 | Alkaloid | SGD | low | borderline |
| PHvul06G0015110.1 | Alkaloid | SGD | medium | pass |
| PHvul06G0015120.1 | Alkaloid | SGD | medium | pass |
| PHvul06G0015120.2 | Alkaloid | SGD | medium | pass |
| PHvul07G0013210.1 | Alkaloid | SGD | medium | pass |