PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
PHvul02G0002670.1 Alkaloid 7DLGT medium pass
PHvul02G0005400.1 Alkaloid 7DLGT low borderline
PHvul02G0007560.1 Alkaloid 7DLGT medium pass
PHvul02G0009340.1 Alkaloid 7DLGT low borderline
PHvul02G0009500.1 Alkaloid 7DLGT low borderline
PHvul02G0009670.1 Alkaloid 7DLGT high pass
PHvul02G0013230.1 Alkaloid 7DLGT low borderline
PHvul02G0013230.2 Alkaloid 7DLGT low borderline
PHvul02G0014630.1 Alkaloid 7DLGT medium pass
PHvul02G0014640.1 Alkaloid 7DLGT high pass
PHvul02G0014650.1 Alkaloid 7DLGT medium pass
PHvul02G0014660.1 Alkaloid 7DLGT medium pass
PHvul02G0021210.1 Alkaloid 7DLGT low borderline
PHvul02G0021220.1 Alkaloid 7DLGT low borderline
PHvul02G0021230.1 Alkaloid 7DLGT low borderline
PHvul02G0024490.1 Alkaloid 7DLGT high pass
PHvul03G0002280.1 Alkaloid 7DLGT medium pass
PHvul03G0003760.1 Alkaloid 7DLGT low borderline
PHvul03G0004780.1 Alkaloid 7DLGT low borderline
PHvul03G0004790.1 Alkaloid 7DLGT low borderline
PHvul03G0004800.1 Alkaloid 7DLGT medium pass
PHvul03G0004810.1 Alkaloid 7DLGT high pass
PHvul03G0010520.1 Alkaloid 7DLGT medium pass
PHvul03G0010530.1 Alkaloid 7DLGT low borderline
PHvul03G0010540.1 Alkaloid 7DLGT low borderline
PHvul03G0015060.1 Alkaloid 7DLGT low borderline
PHvul03G0024310.1 Alkaloid 7DLGT low borderline
PHvul03G0029280.1 Alkaloid 7DLGT low borderline
PHvul03G0029290.1 Alkaloid 7DLGT low borderline
PHvul04G0002810.1 Alkaloid 7DLGT low borderline
PHvul04G0003330.1 Alkaloid 7DLGT low borderline
PHvul04G0003420.1 Alkaloid 7DLGT low borderline
PHvul04G0003470.1 Alkaloid 7DLGT low borderline
PHvul04G0003480.1 Alkaloid 7DLGT low borderline
PHvul04G0003890.1 Alkaloid 7DLGT medium pass
PHvul04G0003910.1 Alkaloid 7DLGT medium pass
PHvul04G0003920.1 Alkaloid 7DLGT medium pass
PHvul04G0003930.1 Alkaloid 7DLGT high pass
PHvul04G0003940.1 Alkaloid 7DLGT high pass
PHvul04G0003950.1 Alkaloid 7DLGT medium pass
PHvul04G0003960.1 Alkaloid 7DLGT medium pass
PHvul04G0003970.1 Alkaloid 7DLGT medium pass
PHvul04G0004070.1 Alkaloid 7DLGT medium pass
PHvul04G0004080.1 Alkaloid 7DLGT medium pass
PHvul04G0004460.1 Alkaloid 7DLGT high pass
PHvul04G0004640.1 Alkaloid 7DLGT high pass
PHvul04G0004650.1 Alkaloid 7DLGT medium pass
PHvul04G0004660.1 Alkaloid 7DLGT medium pass
PHvul04G0004670.1 Alkaloid 7DLGT medium pass
PHvul04G0004680.1 Alkaloid 7DLGT medium pass