PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PHvul03G0000080.1 Alkaloid T16H medium borderline
PHvul03G0020820.1 Alkaloid T16H medium borderline
PHvul03G0025780.1 Alkaloid T16H medium borderline
PHvul04G0012130.1 Alkaloid T16H medium borderline
PHvul04G0016380.1 Alkaloid T16H medium borderline
PHvul04G0016390.1 Alkaloid T16H medium borderline
PHvul04G0016400.1 Alkaloid T16H medium borderline
PHvul04G0016410.1 Alkaloid T16H medium borderline
PHvul05G0000230.1 Alkaloid T16H medium borderline
PHvul05G0005300.1 Alkaloid T16H low borderline
PHvul06G0000800.1 Alkaloid T16H medium borderline
PHvul06G0005020.1 Alkaloid T16H medium borderline
PHvul06G0007820.1 Alkaloid T16H medium borderline
PHvul07G0002570.1 Alkaloid T16H medium borderline
PHvul07G0010570.1 Alkaloid T16H medium borderline
PHvul07G0024300.1 Alkaloid T16H medium borderline
PHvul07G0024310.1 Alkaloid T16H medium borderline
PHvul08G0024850.1 Alkaloid T16H medium borderline
PHvul08G0024970.1 Alkaloid T16H medium borderline
PHvul09G0017600.1 Alkaloid T16H medium borderline
PHvul09G0017610.1 Alkaloid T16H medium borderline
PHvul10G0002190.1 Alkaloid T16H medium borderline
PHvul10G0005130.1 Alkaloid T16H medium borderline
PHvul10G0011730.1 Alkaloid T16H medium borderline
PHvul11G0015740.1 Alkaloid T16H medium borderline
PHvul01G0005260.1 Alkaloid T3O medium borderline
PHvul01G0009030.1 Alkaloid T3O low borderline
PHvul01G0011140.1 Alkaloid T3O medium borderline
PHvul01G0011200.1 Alkaloid T3O low borderline
PHvul01G0013640.1 Alkaloid T3O medium borderline
PHvul01G0013650.1 Alkaloid T3O medium borderline
PHvul01G0013660.1 Alkaloid T3O medium borderline
PHvul01G0013670.1 Alkaloid T3O low borderline
PHvul01G0013700.1 Alkaloid T3O medium borderline
PHvul01G0013710.1 Alkaloid T3O medium borderline
PHvul01G0013720.1 Alkaloid T3O medium borderline
PHvul01G0015550.1 Alkaloid T3O medium pass
PHvul01G0015570.1 Alkaloid T3O medium pass
PHvul01G0018640.1 Alkaloid T3O medium pass
PHvul01G0024020.1 Alkaloid T3O medium pass
PHvul02G0000560.1 Alkaloid T3O medium pass
PHvul02G0001450.1 Alkaloid T3O medium borderline
PHvul02G0001460.1 Alkaloid T3O medium borderline
PHvul02G0002480.1 Alkaloid T3O medium borderline
PHvul02G0002490.1 Alkaloid T3O medium borderline
PHvul02G0002500.1 Alkaloid T3O medium borderline
PHvul02G0002510.1 Alkaloid T3O medium borderline
PHvul02G0002950.1 Alkaloid T3O medium pass
PHvul02G0002950.2 Alkaloid T3O medium pass
PHvul02G0009980.1 Alkaloid T3O high pass