PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
PHvul08G0002670.2 Alkaloid 7DLGT low borderline
PHvul08G0002670.3 Alkaloid 7DLGT low borderline
PHvul08G0003520.1 Alkaloid 7DLGT high pass
PHvul08G0003550.1 Alkaloid 7DLGT high pass
PHvul08G0003560.1 Alkaloid 7DLGT medium pass
PHvul08G0003570.1 Alkaloid 7DLGT low borderline
PHvul08G0003720.1 Alkaloid 7DLGT medium pass
PHvul08G0009170.1 Alkaloid 7DLGT low borderline
PHvul08G0009180.1 Alkaloid 7DLGT medium pass
PHvul08G0009190.1 Alkaloid 7DLGT medium pass
PHvul08G0009210.1 Alkaloid 7DLGT high pass
PHvul08G0009220.1 Alkaloid 7DLGT medium pass
PHvul08G0010180.1 Alkaloid 7DLGT low borderline
PHvul08G0013090.1 Alkaloid 7DLGT low borderline
PHvul08G0013090.2 Alkaloid 7DLGT low borderline
PHvul08G0013090.3 Alkaloid 7DLGT low borderline
PHvul08G0013090.4 Alkaloid 7DLGT low borderline
PHvul08G0013190.1 Alkaloid 7DLGT low borderline
PHvul08G0013190.2 Alkaloid 7DLGT low borderline
PHvul08G0013810.1 Alkaloid 7DLGT medium pass
PHvul08G0013820.1 Alkaloid 7DLGT high pass
PHvul08G0013830.1 Alkaloid 7DLGT high pass
PHvul08G0013840.1 Alkaloid 7DLGT high pass
PHvul08G0013860.1 Alkaloid 7DLGT low borderline
PHvul08G0015450.1 Alkaloid 7DLGT low borderline
PHvul08G0017580.1 Alkaloid 7DLGT medium pass
PHvul08G0017640.1 Alkaloid 7DLGT medium pass
PHvul08G0017660.1 Alkaloid 7DLGT medium pass
PHvul08G0017670.1 Alkaloid 7DLGT medium pass
PHvul08G0021250.1 Alkaloid 7DLGT low borderline
PHvul08G0021260.1 Alkaloid 7DLGT low borderline
PHvul08G0021270.1 Alkaloid 7DLGT low borderline
PHvul08G0025800.1 Alkaloid 7DLGT low borderline
PHvul08G0025800.2 Alkaloid 7DLGT low borderline
PHvul08G0025810.1 Alkaloid 7DLGT low borderline
PHvul08G0025810.2 Alkaloid 7DLGT low borderline
PHvul08G0025810.3 Alkaloid 7DLGT low borderline
PHvul08G0025810.4 Alkaloid 7DLGT low borderline
PHvul08G0025810.5 Alkaloid 7DLGT low borderline
PHvul08G0025870.1 Alkaloid 7DLGT low borderline
PHvul08G0026350.1 Alkaloid 7DLGT medium pass
PHvul08G0026360.1 Alkaloid 7DLGT low borderline
PHvul08G0029200.1 Alkaloid 7DLGT medium pass
PHvul08G0029210.1 Alkaloid 7DLGT low borderline
PHvul08G0029280.1 Alkaloid 7DLGT medium pass
PHvul09G0011860.1 Alkaloid 7DLGT low borderline
PHvul09G0012430.1 Alkaloid 7DLGT medium pass
PHvul09G0017820.1 Alkaloid 7DLGT low borderline
PHvul09G0022410.1 Alkaloid 7DLGT medium pass
PHvul10G0000850.1 Alkaloid 7DLGT high pass