PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PHvul02G0002620.1 Terpenoid GGPPS medium borderline
PHvul02G0010860.1 Terpenoid GGPPS medium pass
PHvul02G0017950.1 Terpenoid GGPPS medium borderline
PHvul03G0024250.1 Terpenoid GGPPS medium borderline
PHvul03G0025620.1 Terpenoid GGPPS medium borderline
PHvul05G0006360.1 Terpenoid GGPPS medium borderline
PHvul08G0026940.1 Terpenoid GGPPS medium borderline
PHvul08G0026950.1 Terpenoid GGPPS medium borderline
PHvul11G0004960.1 Terpenoid HDR/IspH high pass
PHvul05G0013690.1 Terpenoid HDS/IspG high pass
PHvul02G0011900.1 Terpenoid HMGR medium pass
PHvul03G0019830.1 Terpenoid HMGR low borderline
PHvul03G0027650.1 Terpenoid HMGR medium pass
PHvul06G0004010.1 Terpenoid HMGR low borderline
PHvul08G0021300.1 Terpenoid HMGR medium pass
PHvulscaffold_130000840.1 Terpenoid HMGR medium pass
PHvul02G0015400.1 Terpenoid HMGS high pass
PHvul03G0021540.1 Terpenoid HMGS high pass
PHvul04G0012570.1 Terpenoid HMGS high pass
PHvul04G0012570.2 Terpenoid HMGS high pass
PHvul04G0012570.3 Terpenoid HMGS high pass
PHvul08G0005590.1 Terpenoid IDI medium pass
PHvul02G0018860.1 Terpenoid MCT/IspD low borderline
PHvul03G0009600.1 Terpenoid MCT/IspD high pass
PHvul02G0016030.1 Terpenoid MDS/IspF high pass
PHvul05G0017160.1 Terpenoid MVD low borderline
PHvul07G0002090.1 Terpenoid MVD medium pass
PHvul07G0002180.1 Terpenoid MVD low borderline
PHvul10G0016270.1 Terpenoid MVD low borderline
PHvul03G0011720.1 Terpenoid MVK low borderline
PHvul06G0009230.1 Terpenoid MVK medium pass
PHvul08G0029410.1 Terpenoid MVK low borderline
PHvul09G0005590.1 Terpenoid PMK medium pass
PHvul01G0014940.1 Terpenoid TPS medium pass
PHvul01G0014960.1 Terpenoid TPS medium pass
PHvul01G0014960.2 Terpenoid TPS medium pass
PHvul02G0021690.1 Terpenoid TPS medium pass
PHvul02G0021690.2 Terpenoid TPS medium pass
PHvul02G0021710.1 Terpenoid TPS medium pass
PHvul05G0004820.1 Terpenoid TPS medium pass
PHvul05G0004820.2 Terpenoid TPS medium pass
PHvul05G0008700.1 Terpenoid TPS medium pass
PHvul05G0008700.2 Terpenoid TPS medium pass
PHvul05G0011120.1 Terpenoid TPS medium pass
PHvul05G0011130.1 Terpenoid TPS medium pass
PHvul05G0011130.2 Terpenoid TPS medium pass
PHvul05G0011130.3 Terpenoid TPS medium pass
PHvul05G0011140.1 Terpenoid TPS medium pass
PHvul05G0011160.1 Terpenoid TPS medium pass
PHvul05G0013390.1 Terpenoid TPS medium pass