PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Palpscaffold_60148180 Alkaloid NMT medium borderline
Palpscaffold_60148190 Alkaloid NMT medium borderline
Palpscaffold_60151860 Alkaloid NMT medium pass
Palpscaffold_60155680 Alkaloid NMT low borderline
Palpscaffold_60160020 Alkaloid NMT low borderline
Palpscaffold_60160630 Alkaloid NMT medium pass
Palpscaffold_60161180 Alkaloid NMT low borderline
Palpscaffold_60166220 Alkaloid NMT medium pass
Palpscaffold_60166240 Alkaloid NMT low borderline
Palpscaffold_60166260 Alkaloid NMT medium borderline
Palpscaffold_60169540 Alkaloid NMT medium pass
Palpscaffold_60175010 Alkaloid NMT medium pass
Palpscaffold_60175180 Alkaloid NMT low borderline
Palpscaffold_70184060 Alkaloid NMT medium pass
Palpscaffold_70188760 Alkaloid NMT medium pass
Palpscaffold_70190660 Alkaloid NMT medium borderline
Palpscaffold_70191570 Alkaloid NMT medium pass
Palpscaffold_70194240 Alkaloid NMT low borderline
Palpscaffold_70194250 Alkaloid NMT low borderline
Palpscaffold_70196930 Alkaloid NMT low borderline
Palpscaffold_70197220 Alkaloid NMT low borderline
Palpscaffold_70205810 Alkaloid NMT low borderline
Palpscaffold_70213230 Alkaloid NMT low borderline
Palpscaffold_70214650 Alkaloid NMT medium borderline
Palpscaffold_70216900 Alkaloid NMT low borderline
Palpscaffold_50137600 Alkaloid ODC medium pass
Palpscaffold_70189610 Alkaloid ODC medium pass
Palpscaffold_10021890 Alkaloid PMT low borderline
Palpscaffold_40082230 Alkaloid PMT medium pass
Palpscaffold_70198940 Alkaloid PMT medium borderline
Palpscaffold_10012560 Alkaloid PYKS high pass
Palpscaffold_10012580 Alkaloid PYKS medium pass
Palpscaffold_10012620 Alkaloid PYKS high pass
Palpscaffold_10012630 Alkaloid PYKS low borderline
Palpscaffold_30056080 Alkaloid PYKS medium pass
Palpscaffold_30056100 Alkaloid PYKS medium pass
Palpscaffold_30056190 Alkaloid PYKS high pass
Palpscaffold_30063550 Alkaloid PYKS high pass
Palpscaffold_30067530 Alkaloid PYKS low borderline
Palpscaffold_30076150 Alkaloid PYKS high pass
Palpscaffold_40091910 Alkaloid PYKS low borderline
Palpscaffold_40101230 Alkaloid PYKS low borderline
Palpscaffold_40101240 Alkaloid PYKS low borderline
Palpscaffold_40101380 Alkaloid PYKS low borderline
Palpscaffold_50110530 Alkaloid PYKS high pass
Palpscaffold_50128130 Alkaloid PYKS low borderline
Palpscaffold_50130530 Alkaloid PYKS low borderline
Palpscaffold_50133900 Alkaloid PYKS high pass
Palpscaffold_50134120 Alkaloid PYKS medium pass
Palpscaffold_50142590 Alkaloid PYKS low borderline