PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.02% Terpenoid pathway 22.57% Alkaloid pathway 18.95% Rosmarinic acid pathway 13.67% Flavonoid pathway 12.85% Steroid pathway 4.94%
Family Distribution
C4H 8.4% C3'H/CYP98A 6.73% CYP76 5.12% BAHD 4.49% PAL 4.14% 4CL 3.97% POD 3.91% IFS 3.39%
Other Families 59.84%
More Families (97)
NMT 57 3.28% T3O 48 2.76% DWF4/CYP90B1 48 2.76% F3H 45 2.59% F3'H/CYP75B 42 2.42% STR 39 2.24% BR6OX2/CYP85A2 36 2.07% IFR 34 1.96% UGT 32 1.84% CODM/T6ODM 31 1.78% 7DLGT 28 1.61% PYKS 27 1.55% UFGT 27 1.55% GS 26 1.5% COMT 26 1.5% G8O/G8H 22 1.27% H6H 20 1.15% T16H 20 1.15% LAC 20 1.15% TRI/TRII 18 1.04% IO 17 0.98% CHS 17 0.98% CYP71 16 0.92% F3'5'H/CYP75A 14 0.81% HCT 14 0.81% SMT1/SMT2/SMT3 14 0.81% SGD 12 0.69% FNS 12 0.69% CPD/CYP90A1 12 0.69% 16OMT 11 0.63% RAS 11 0.63% BR6OX1/CYP85A1 11 0.63% SLS 10 0.58% CAD 10 0.58% CSE 10 0.58% 7DLH 9 0.52% CCR 9 0.52% CAS 8 0.46% BBE 7 0.4% CNMT 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% DXS 7 0.4% NCS 6 0.35% COR 6 0.35% ANR 6 0.35% CPR 6 0.35% MPO 5 0.29% ANS/LDOX 5 0.29% DFR 5 0.29% SMO1/SMO2 5 0.29% 8HGO 4 0.23% 6OMT_4OMT_SOMT 4 0.23% GES 4 0.23% TAT 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% PMT 3 0.17% CYP719 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% DWF1 3 0.17% ROT3/CYP90C1 3 0.17% DET2 3 0.17% IDI 3 0.17% MVK 3 0.17% HMGR 3 0.17% ISY 2 0.12% LAMT 2 0.12% ADC 2 0.12% TDC 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% FLS 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% DWF5 2 0.12% MVD 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% HMGS 2 0.12% TYDC_DDC 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP51G1 1 0.06% FK 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HDR/IspH 1 0.06% GPPS 1 0.06% TPS 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% DXR 1 0.06% MCT/IspD 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Palpscaffold_10001510 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Palpscaffold_10002330 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Palpscaffold_40101660 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Palpscaffold_50122460 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Palpscaffold_50139990 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Palpscaffold_50140140 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Palpscaffold_70210690 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Palpscaffold_70211260 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL