PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.02% Terpenoid pathway 22.57% Alkaloid pathway 18.95% Rosmarinic acid pathway 13.67% Flavonoid pathway 12.85% Steroid pathway 4.94%
Family Distribution
C4H 8.4% C3'H/CYP98A 6.73% CYP76 5.12% BAHD 4.49% PAL 4.14% 4CL 3.97% POD 3.91% IFS 3.39%
Other Families 59.84%
More Families (97)
NMT 57 3.28% T3O 48 2.76% DWF4/CYP90B1 48 2.76% F3H 45 2.59% F3'H/CYP75B 42 2.42% STR 39 2.24% BR6OX2/CYP85A2 36 2.07% IFR 34 1.96% UGT 32 1.84% CODM/T6ODM 31 1.78% 7DLGT 28 1.61% PYKS 27 1.55% UFGT 27 1.55% GS 26 1.5% COMT 26 1.5% G8O/G8H 22 1.27% H6H 20 1.15% T16H 20 1.15% LAC 20 1.15% TRI/TRII 18 1.04% IO 17 0.98% CHS 17 0.98% CYP71 16 0.92% F3'5'H/CYP75A 14 0.81% HCT 14 0.81% SMT1/SMT2/SMT3 14 0.81% SGD 12 0.69% FNS 12 0.69% CPD/CYP90A1 12 0.69% 16OMT 11 0.63% RAS 11 0.63% BR6OX1/CYP85A1 11 0.63% SLS 10 0.58% CAD 10 0.58% CSE 10 0.58% 7DLH 9 0.52% CCR 9 0.52% CAS 8 0.46% BBE 7 0.4% CNMT 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% DXS 7 0.4% NCS 6 0.35% COR 6 0.35% ANR 6 0.35% CPR 6 0.35% MPO 5 0.29% ANS/LDOX 5 0.29% DFR 5 0.29% SMO1/SMO2 5 0.29% 8HGO 4 0.23% 6OMT_4OMT_SOMT 4 0.23% GES 4 0.23% TAT 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% PMT 3 0.17% CYP719 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% DWF1 3 0.17% ROT3/CYP90C1 3 0.17% DET2 3 0.17% IDI 3 0.17% MVK 3 0.17% HMGR 3 0.17% ISY 2 0.12% LAMT 2 0.12% ADC 2 0.12% TDC 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% FLS 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% DWF5 2 0.12% MVD 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% HMGS 2 0.12% TYDC_DDC 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP51G1 1 0.06% FK 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HDR/IspH 1 0.06% GPPS 1 0.06% TPS 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% DXR 1 0.06% MCT/IspD 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Palpscaffold_10000840 Alkaloid 7DLGT medium pass
Palpscaffold_10009920 Alkaloid 7DLGT medium pass
Palpscaffold_10027800 Alkaloid 7DLGT medium pass
Palpscaffold_20051830 Alkaloid 7DLGT low borderline
Palpscaffold_20052240 Alkaloid 7DLGT medium pass
Palpscaffold_30059840 Alkaloid 7DLGT medium pass
Palpscaffold_30063230 Alkaloid 7DLGT medium pass
Palpscaffold_30065700 Alkaloid 7DLGT medium pass
Palpscaffold_30075960 Alkaloid 7DLGT low borderline
Palpscaffold_30077440 Alkaloid 7DLGT low borderline
Palpscaffold_30077580 Alkaloid 7DLGT low borderline
Palpscaffold_40093930 Alkaloid 7DLGT medium pass
Palpscaffold_40096090 Alkaloid 7DLGT low borderline
Palpscaffold_50108920 Alkaloid 7DLGT low borderline
Palpscaffold_50117670 Alkaloid 7DLGT low borderline
Palpscaffold_50135740 Alkaloid 7DLGT medium pass
Palpscaffold_50135770 Alkaloid 7DLGT medium pass
Palpscaffold_60148860 Alkaloid 7DLGT medium pass
Palpscaffold_60155420 Alkaloid 7DLGT medium pass
Palpscaffold_60169170 Alkaloid 7DLGT low borderline
Palpscaffold_70181620 Alkaloid 7DLGT medium pass
Palpscaffold_70183620 Alkaloid 7DLGT low borderline
Palpscaffold_70189180 Alkaloid 7DLGT low borderline
Palpscaffold_70189190 Alkaloid 7DLGT low borderline
Palpscaffold_70199930 Alkaloid 7DLGT low borderline
Palpscaffold_70199940 Alkaloid 7DLGT medium pass
Palpscaffold_70206750 Alkaloid 7DLGT low borderline
Palpscaffold_70206770 Alkaloid 7DLGT low borderline