PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.02% Terpenoid pathway 22.57% Alkaloid pathway 18.95% Rosmarinic acid pathway 13.67% Flavonoid pathway 12.85% Steroid pathway 4.94%
Family Distribution
C4H 8.4% C3'H/CYP98A 6.73% CYP76 5.12% BAHD 4.49% PAL 4.14% 4CL 3.97% POD 3.91% IFS 3.39%
Other Families 59.84%
More Families (97)
NMT 57 3.28% T3O 48 2.76% DWF4/CYP90B1 48 2.76% F3H 45 2.59% F3'H/CYP75B 42 2.42% STR 39 2.24% BR6OX2/CYP85A2 36 2.07% IFR 34 1.96% UGT 32 1.84% CODM/T6ODM 31 1.78% 7DLGT 28 1.61% PYKS 27 1.55% UFGT 27 1.55% GS 26 1.5% COMT 26 1.5% G8O/G8H 22 1.27% H6H 20 1.15% T16H 20 1.15% LAC 20 1.15% TRI/TRII 18 1.04% IO 17 0.98% CHS 17 0.98% CYP71 16 0.92% F3'5'H/CYP75A 14 0.81% HCT 14 0.81% SMT1/SMT2/SMT3 14 0.81% SGD 12 0.69% FNS 12 0.69% CPD/CYP90A1 12 0.69% 16OMT 11 0.63% RAS 11 0.63% BR6OX1/CYP85A1 11 0.63% SLS 10 0.58% CAD 10 0.58% CSE 10 0.58% 7DLH 9 0.52% CCR 9 0.52% CAS 8 0.46% BBE 7 0.4% CNMT 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% DXS 7 0.4% NCS 6 0.35% COR 6 0.35% ANR 6 0.35% CPR 6 0.35% MPO 5 0.29% ANS/LDOX 5 0.29% DFR 5 0.29% SMO1/SMO2 5 0.29% 8HGO 4 0.23% 6OMT_4OMT_SOMT 4 0.23% GES 4 0.23% TAT 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% PMT 3 0.17% CYP719 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% DWF1 3 0.17% ROT3/CYP90C1 3 0.17% DET2 3 0.17% IDI 3 0.17% MVK 3 0.17% HMGR 3 0.17% ISY 2 0.12% LAMT 2 0.12% ADC 2 0.12% TDC 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% FLS 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% DWF5 2 0.12% MVD 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% HMGS 2 0.12% TYDC_DDC 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP51G1 1 0.06% FK 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HDR/IspH 1 0.06% GPPS 1 0.06% TPS 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% DXR 1 0.06% MCT/IspD 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
Palpscaffold_10012560 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Palpscaffold_10012580 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Palpscaffold_10012620 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_10012630 Flavonoid CHS low borderline CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Palpscaffold_30056080 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_30056100 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_30056190 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_30063550 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_30076150 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Palpscaffold_50110530 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
Palpscaffold_50133900 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Palpscaffold_50134120 Flavonoid CHS medium pass CHS__00005__sp_O80400_VPS_HUMLU
Palpscaffold_60152060 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Palpscaffold_60157870 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Palpscaffold_60172750 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Palpscaffold_70217000 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Palpscaffold_70217010 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA