PlantSME Plant secondary metabolism enzyme database

Populus tremuloides (populus_tremuloides)

Imported from atlas release summary for Populus tremuloides.

1603
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.01% Phenylpropanoid pathway 22.33% Alkaloid pathway 21.65% Flavonoid pathway 12.79% Rosmarinic acid pathway 8.11% Steroid pathway 6.11%
Family Distribution
BAHD 6.08% C4H 5.71% C3'H/CYP98A 5.57% UGT 4.03% POD 3.89% 4CL 3.84% IFS 3.81% CYP76 3.71%
Other Families 63.37%
More Families (96)
7DLGT 132 3.52% T3O 126 3.36% UFGT 125 3.33% F3H 105 2.8% NMT 95 2.53% DWF4/CYP90B1 92 2.45% F3'H/CYP75B 67 1.79% STR 65 1.73% BR6OX2/CYP85A2 65 1.73% H6H 57 1.52% CODM/T6ODM 55 1.47% CAD 55 1.47% BBE 51 1.36% LAC 51 1.36% SMT1/SMT2/SMT3 51 1.36% TRI/TRII 49 1.31% IFR 42 1.12% CYP90D1 42 1.12% HCT 40 1.07% CAS 38 1.01% CYP71 38 1.01% CSE 37 0.99% RAS 37 0.99% IO 36 0.96% PYKS 36 0.96% COMT 36 0.96% GS 32 0.85% SGD 31 0.83% TPS 27 0.72% CCR 26 0.69% GES 25 0.67% SLS 25 0.67% 16OMT 25 0.67% ANR 25 0.67% TAT 25 0.67% FNS 24 0.64% T16H 22 0.59% PMT 20 0.53% F3'5'H/CYP75A 18 0.48% DFR 18 0.48% PAL 18 0.48% 8HGO 17 0.45% NCS 17 0.45% F5H/CYP84A 17 0.45% BR6OX1/CYP85A1 17 0.45% LAMT 16 0.43% 7DLH 16 0.43% G8O/G8H 15 0.4% CHS 15 0.4% CPD/CYP90A1 15 0.4% COR 13 0.35% CYP51G1 13 0.35% ANS/LDOX 12 0.32% ISY 11 0.29% DET2 11 0.29% CYP719 10 0.27% MPO 10 0.27% CPR 10 0.27% SQE 10 0.27% CNMT 9 0.24% HPPR 9 0.24% GGPPS 9 0.24% AACT 9 0.24% FPPS 9 0.24% SQS/FDFT1 8 0.21% ROT3/CYP90C1 8 0.21% CCoAOMT 7 0.19% DXS 7 0.19% HMGR 6 0.16% SMO1/SMO2 5 0.13% MVD 5 0.13% CYP80B1 4 0.11% 6OMT_4OMT_SOMT 4 0.11% CMK/IspE 4 0.11% TDC 3 0.08% XMT_MXMT_DXMT 3 0.08% TYDC_DDC 3 0.08% CHI 3 0.08% MVK 3 0.08% ODC 2 0.05% CYP80F1 2 0.05% DWF1 2 0.05% DWF5 2 0.05% DWF7 2 0.05% HYD1 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% PMK 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% MDS/IspF 2 0.05% ADC 1 0.03% FK 1 0.03% CPI1 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 465 19 BAHD (191) View species results
Phenylpropanoid pathway 358 13 POD (140) View species results
Alkaloid pathway 347 21 7DLGT (59) View species results
Flavonoid pathway 205 11 UFGT (115) View species results
Rosmarinic acid pathway 130 7 C4H (39) View species results
Steroid pathway 98 14 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1353 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 305 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
PtremuloPotrs0004630008940.1.v1.427 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
PtremuloPotrs0010380022250.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0023140048050.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0043630078740.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0066420113970.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0077710132630.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0079610138140.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0117300206590.1.v1.427 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
PtremuloPotrs0131820216930.1.v1.427 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
PtremuloPotrs0180020252770.1.v1.427 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
PtremuloPotrs0183510257180.1.v1.427 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
PtremuloPotrs0316770297580.1.v1.427 Alkaloid COR low borderline COR__00001__sp_B9VRJ2_COR15_PAPSO
PtremuloPotrs0369740308640.1.v1.427 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO