Populus tremuloides (populus_tremuloides)
Imported from atlas release summary for Populus tremuloides.
1603
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1603
Candidate Genes
BAHD
6.08%
C4H
5.71%
C3'H/CYP98A
5.57%
UGT
4.03%
POD
3.89%
4CL
3.84%
IFS
3.81%
CYP76
3.71%
Other Families
63.37%
More Families (96)
7DLGT
132
3.52%
T3O
126
3.36%
UFGT
125
3.33%
F3H
105
2.8%
NMT
95
2.53%
DWF4/CYP90B1
92
2.45%
F3'H/CYP75B
67
1.79%
STR
65
1.73%
BR6OX2/CYP85A2
65
1.73%
H6H
57
1.52%
CODM/T6ODM
55
1.47%
CAD
55
1.47%
BBE
51
1.36%
LAC
51
1.36%
SMT1/SMT2/SMT3
51
1.36%
TRI/TRII
49
1.31%
IFR
42
1.12%
CYP90D1
42
1.12%
HCT
40
1.07%
CAS
38
1.01%
CYP71
38
1.01%
CSE
37
0.99%
RAS
37
0.99%
IO
36
0.96%
PYKS
36
0.96%
COMT
36
0.96%
GS
32
0.85%
SGD
31
0.83%
TPS
27
0.72%
CCR
26
0.69%
GES
25
0.67%
SLS
25
0.67%
16OMT
25
0.67%
ANR
25
0.67%
TAT
25
0.67%
FNS
24
0.64%
T16H
22
0.59%
PMT
20
0.53%
F3'5'H/CYP75A
18
0.48%
DFR
18
0.48%
PAL
18
0.48%
8HGO
17
0.45%
NCS
17
0.45%
F5H/CYP84A
17
0.45%
BR6OX1/CYP85A1
17
0.45%
LAMT
16
0.43%
7DLH
16
0.43%
G8O/G8H
15
0.4%
CHS
15
0.4%
CPD/CYP90A1
15
0.4%
COR
13
0.35%
CYP51G1
13
0.35%
ANS/LDOX
12
0.32%
ISY
11
0.29%
DET2
11
0.29%
CYP719
10
0.27%
MPO
10
0.27%
CPR
10
0.27%
SQE
10
0.27%
CNMT
9
0.24%
HPPR
9
0.24%
GGPPS
9
0.24%
AACT
9
0.24%
FPPS
9
0.24%
SQS/FDFT1
8
0.21%
ROT3/CYP90C1
8
0.21%
CCoAOMT
7
0.19%
DXS
7
0.19%
HMGR
6
0.16%
SMO1/SMO2
5
0.13%
MVD
5
0.13%
CYP80B1
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CMK/IspE
4
0.11%
TDC
3
0.08%
XMT_MXMT_DXMT
3
0.08%
TYDC_DDC
3
0.08%
CHI
3
0.08%
MVK
3
0.08%
ODC
2
0.05%
CYP80F1
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
DWF7
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 465 | 19 | BAHD (191) | View species results |
| Phenylpropanoid pathway | 358 | 13 | POD (140) | View species results |
| Alkaloid pathway | 347 | 21 | 7DLGT (59) | View species results |
| Flavonoid pathway | 205 | 11 | UFGT (115) | View species results |
| Rosmarinic acid pathway | 130 | 7 | C4H (39) | View species results |
| Steroid pathway | 98 | 14 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1353 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 305 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PtremuloPotrs0016980036880.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0023090047950.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0032450061730.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0037020069130.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0039390072680.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0049340088060.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0050290089360.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0050290089370.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0065140112170.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0075080127150.2.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0083000146500.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0085660153920.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0124770211620.2.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0149920229270.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0175220247000.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0190990267010.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0195890275910.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0197510278780.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0197510278790.2.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0198590280780.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0201630289220.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0201630289230.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0359550305730.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0371530309090.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0377550311340.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs0420110335440.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs0431130344960.1.v1.427 | Alkaloid | SGD | low | borderline |
| PtremuloPotrs1450840349940.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs1453760350380.1.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs1467550352000.2.v1.427 | Alkaloid | SGD | medium | pass |
| PtremuloPotrs1471510352710.1.v1.427 | Alkaloid | SGD | medium | pass |