Populus tremuloides (populus_tremuloides)
Imported from atlas release summary for Populus tremuloides.
1603
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1603
Candidate Genes
BAHD
6.08%
C4H
5.71%
C3'H/CYP98A
5.57%
UGT
4.03%
POD
3.89%
4CL
3.84%
IFS
3.81%
CYP76
3.71%
Other Families
63.37%
More Families (96)
7DLGT
132
3.52%
T3O
126
3.36%
UFGT
125
3.33%
F3H
105
2.8%
NMT
95
2.53%
DWF4/CYP90B1
92
2.45%
F3'H/CYP75B
67
1.79%
STR
65
1.73%
BR6OX2/CYP85A2
65
1.73%
H6H
57
1.52%
CODM/T6ODM
55
1.47%
CAD
55
1.47%
BBE
51
1.36%
LAC
51
1.36%
SMT1/SMT2/SMT3
51
1.36%
TRI/TRII
49
1.31%
IFR
42
1.12%
CYP90D1
42
1.12%
HCT
40
1.07%
CAS
38
1.01%
CYP71
38
1.01%
CSE
37
0.99%
RAS
37
0.99%
IO
36
0.96%
PYKS
36
0.96%
COMT
36
0.96%
GS
32
0.85%
SGD
31
0.83%
TPS
27
0.72%
CCR
26
0.69%
GES
25
0.67%
SLS
25
0.67%
16OMT
25
0.67%
ANR
25
0.67%
TAT
25
0.67%
FNS
24
0.64%
T16H
22
0.59%
PMT
20
0.53%
F3'5'H/CYP75A
18
0.48%
DFR
18
0.48%
PAL
18
0.48%
8HGO
17
0.45%
NCS
17
0.45%
F5H/CYP84A
17
0.45%
BR6OX1/CYP85A1
17
0.45%
LAMT
16
0.43%
7DLH
16
0.43%
G8O/G8H
15
0.4%
CHS
15
0.4%
CPD/CYP90A1
15
0.4%
COR
13
0.35%
CYP51G1
13
0.35%
ANS/LDOX
12
0.32%
ISY
11
0.29%
DET2
11
0.29%
CYP719
10
0.27%
MPO
10
0.27%
CPR
10
0.27%
SQE
10
0.27%
CNMT
9
0.24%
HPPR
9
0.24%
GGPPS
9
0.24%
AACT
9
0.24%
FPPS
9
0.24%
SQS/FDFT1
8
0.21%
ROT3/CYP90C1
8
0.21%
CCoAOMT
7
0.19%
DXS
7
0.19%
HMGR
6
0.16%
SMO1/SMO2
5
0.13%
MVD
5
0.13%
CYP80B1
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CMK/IspE
4
0.11%
TDC
3
0.08%
XMT_MXMT_DXMT
3
0.08%
TYDC_DDC
3
0.08%
CHI
3
0.08%
MVK
3
0.08%
ODC
2
0.05%
CYP80F1
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
DWF7
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 465 | 19 | BAHD (191) | View species results |
| Phenylpropanoid pathway | 358 | 13 | POD (140) | View species results |
| Alkaloid pathway | 347 | 21 | 7DLGT (59) | View species results |
| Flavonoid pathway | 205 | 11 | UFGT (115) | View species results |
| Rosmarinic acid pathway | 130 | 7 | C4H (39) | View species results |
| Steroid pathway | 98 | 14 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1353 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 305 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PtremuloPotrs0094770181750.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| PtremuloPotrs0106220193110.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| PtremuloPotrs0107050193980.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| PtremuloPotrs0108580196190.2.v1.427 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| PtremuloPotrs0108620196280.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| PtremuloPotrs0109780198000.2.v1.427 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| PtremuloPotrs0112590201870.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| PtremuloPotrs0126830213190.3.v1.427 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| PtremuloPotrs0130330215690.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| PtremuloPotrs0131020216310.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| PtremuloPotrs0133500218100.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| PtremuloPotrs0134020218620.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| PtremuloPotrs0140520223140.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| PtremuloPotrs0160920236690.16.v1.427 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0165460239820.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| PtremuloPotrs0166530240550.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| PtremuloPotrs0179340251880.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0180360253240.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PtremuloPotrs0188830264000.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| PtremuloPotrs0190030265680.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0199050282030.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| PtremuloPotrs0199290282670.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| PtremuloPotrs0200790286450.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| PtremuloPotrs0201220287860.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| PtremuloPotrs0201340288200.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0201570288990.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| PtremuloPotrs0201940290790.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| PtremuloPotrs0348430303200.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| PtremuloPotrs0389380316580.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| PtremuloPotrs0389940316880.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| PtremuloPotrs0395130319470.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| PtremuloPotrs0399090321280.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| PtremuloPotrs0400120322040.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| PtremuloPotrs0411660329650.2.v1.427 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| PtremuloPotrs0413890331110.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0419360334740.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| PtremuloPotrs0423420338200.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| PtremuloPotrs0423750338650.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| PtremuloPotrs0425050339740.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PtremuloPotrs0425460340050.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| PtremuloPotrs0428650342940.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| PtremuloPotrs0429140343310.1.v1.427 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PtremuloPotrs0429540343680.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| PtremuloPotrs1472300352750.1.v1.427 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| PtremuloPotrs1486250354740.1.v1.427 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |