Populus tremuloides (populus_tremuloides)
Imported from atlas release summary for Populus tremuloides.
1925
Candidate Protein Records
1603
Pathway-Level Records
3751
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3751
Family-Level Calls
BAHD
6.08%
C4H
5.71%
C3'H/CYP98A
5.57%
UGT
4.03%
POD
3.89%
4CL
3.84%
IFS
3.81%
CYP76
3.71%
Other Families
63.37%
More Families (96)
7DLGT
132
3.52%
T3O
126
3.36%
UFGT
125
3.33%
F3H
105
2.8%
NMT
95
2.53%
DWF4/CYP90B1
92
2.45%
F3'H/CYP75B
67
1.79%
STR
65
1.73%
BR6OX2/CYP85A2
65
1.73%
H6H
57
1.52%
CODM/T6ODM
55
1.47%
CAD
55
1.47%
BBE
51
1.36%
LAC
51
1.36%
SMT1/SMT2/SMT3
51
1.36%
TRI/TRII
49
1.31%
IFR
42
1.12%
CYP90D1
42
1.12%
HCT
40
1.07%
CAS
38
1.01%
CYP71
38
1.01%
CSE
37
0.99%
RAS
37
0.99%
IO
36
0.96%
PYKS
36
0.96%
COMT
36
0.96%
GS
32
0.85%
SGD
31
0.83%
TPS
27
0.72%
CCR
26
0.69%
GES
25
0.67%
SLS
25
0.67%
16OMT
25
0.67%
ANR
25
0.67%
TAT
25
0.67%
FNS
24
0.64%
T16H
22
0.59%
PMT
20
0.53%
F3'5'H/CYP75A
18
0.48%
DFR
18
0.48%
PAL
18
0.48%
8HGO
17
0.45%
NCS
17
0.45%
F5H/CYP84A
17
0.45%
BR6OX1/CYP85A1
17
0.45%
LAMT
16
0.43%
7DLH
16
0.43%
G8O/G8H
15
0.4%
CHS
15
0.4%
CPD/CYP90A1
15
0.4%
COR
13
0.35%
CYP51G1
13
0.35%
ANS/LDOX
12
0.32%
ISY
11
0.29%
DET2
11
0.29%
CYP719
10
0.27%
MPO
10
0.27%
CPR
10
0.27%
SQE
10
0.27%
CNMT
9
0.24%
HPPR
9
0.24%
GGPPS
9
0.24%
AACT
9
0.24%
FPPS
9
0.24%
SQS/FDFT1
8
0.21%
ROT3/CYP90C1
8
0.21%
CCoAOMT
7
0.19%
DXS
7
0.19%
HMGR
6
0.16%
SMO1/SMO2
5
0.13%
MVD
5
0.13%
CYP80B1
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CMK/IspE
4
0.11%
TDC
3
0.08%
XMT_MXMT_DXMT
3
0.08%
TYDC_DDC
3
0.08%
CHI
3
0.08%
MVK
3
0.08%
ODC
2
0.05%
CYP80F1
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
DWF7
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 465 | 19 | BAHD (191) | View species results |
| Phenylpropanoid pathway | 358 | 13 | POD (140) | View species results |
| Alkaloid pathway | 347 | 21 | 7DLGT (59) | View species results |
| Flavonoid pathway | 205 | 11 | UFGT (115) | View species results |
| Rosmarinic acid pathway | 130 | 7 | C4H (39) | View species results |
| Steroid pathway | 98 | 14 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1353 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 305 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PtremuloPotrs0429540343680.1.v1.427 | Alkaloid | NMT | medium | borderline |
| PtremuloPotrs1472300352750.1.v1.427 | Alkaloid | NMT | medium | borderline |
| PtremuloPotrs1486250354740.1.v1.427 | Alkaloid | NMT | medium | pass |
| PtremuloPotrs0045240081610.1.v1.427 | Alkaloid | ODC | medium | pass |
| PtremuloPotrs0413840331040.1.v1.427 | Alkaloid | ODC | medium | pass |
| PtremuloPotrs0007470014860.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0025450051600.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0052130092150.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0067710115980.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0078890135990.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0086180155360.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0090690169810.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0090850170290.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0093050180470.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0099830185990.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0167880241750.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0188740263920.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0191830268270.1.v1.427 | Alkaloid | PMT | medium | borderline |
| PtremuloPotrs0195250274890.3.v1.427 | Alkaloid | PMT | medium | borderline |
| PtremuloPotrs0197590279060.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0201450288590.3.v1.427 | Alkaloid | PMT | medium | borderline |
| PtremuloPotrs0311750297030.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0326560298940.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0343190302170.1.v1.427 | Alkaloid | PMT | low | borderline |
| PtremuloPotrs0430840344770.1.v1.427 | Alkaloid | PMT | medium | pass |
| PtremuloPotrs0004750009450.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0005800011240.1.v1.427 | Alkaloid | PYKS | medium | pass |
| PtremuloPotrs0005800011250.1.v1.427 | Alkaloid | PYKS | medium | pass |
| PtremuloPotrs0014750031960.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0022130046390.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0025840052260.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0032140061130.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0035690066790.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0035690066800.1.v1.427 | Alkaloid | PYKS | medium | pass |
| PtremuloPotrs0047530085420.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0051070090570.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0059140102620.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0079410137520.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0083700148550.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0089170164740.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0089510165890.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0112970202460.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0118130207090.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0122890210180.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0140740223360.1.v1.427 | Alkaloid | PYKS | medium | pass |
| PtremuloPotrs0158750235120.1.v1.427 | Alkaloid | PYKS | high | pass |
| PtremuloPotrs0168840242370.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0169700243010.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0176760248990.1.v1.427 | Alkaloid | PYKS | low | borderline |
| PtremuloPotrs0192860269900.1.v1.427 | Alkaloid | PYKS | low | borderline |