Prunus avium (prunus_avium)
Imported from atlas release summary for Prunus avium.
2014
Candidate Protein Records
1762
Pathway-Level Records
4155
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4155
Family-Level Calls
C4H
7.03%
BAHD
5.97%
UGT
5.8%
C3'H/CYP98A
5.49%
7DLGT
4.31%
CYP76
4.12%
IFS
4.04%
UFGT
3.92%
Other Families
59.33%
More Families (96)
POD
119
2.86%
T3O
118
2.84%
F3H
113
2.72%
4CL
108
2.6%
DWF4/CYP90B1
86
2.07%
NMT
76
1.83%
CAD
75
1.81%
H6H
73
1.76%
STR
64
1.54%
CODM/T6ODM
61
1.47%
F3'H/CYP75B
61
1.47%
BR6OX2/CYP85A2
61
1.47%
SGD
58
1.4%
HCT
56
1.35%
GS
55
1.32%
TAT
53
1.28%
TPS
51
1.23%
G8O/G8H
49
1.18%
T16H
48
1.16%
GES
44
1.06%
CAS
43
1.03%
CSE
42
1.01%
LAC
41
0.99%
CYP71
38
0.91%
TRI/TRII
37
0.89%
BBE
37
0.89%
FNS
36
0.87%
CYP90D1
36
0.87%
COMT
35
0.84%
IO
33
0.79%
7DLH
33
0.79%
RAS
33
0.79%
SMT1/SMT2/SMT3
32
0.77%
CCR
28
0.67%
NCS
27
0.65%
ANR
26
0.63%
IFR
26
0.63%
PMT
24
0.58%
F3'5'H/CYP75A
23
0.55%
BR6OX1/CYP85A1
22
0.53%
16OMT
21
0.51%
LAMT
21
0.51%
F5H/CYP84A
21
0.51%
PYKS
18
0.43%
DFR
18
0.43%
CPD/CYP90A1
16
0.39%
COR
15
0.36%
SLS
14
0.34%
8HGO
14
0.34%
ANS/LDOX
12
0.29%
DWF7
12
0.29%
CCoAOMT
11
0.26%
CYP51G1
11
0.26%
ROT3/CYP90C1
10
0.24%
ISY
9
0.22%
PAL
9
0.22%
SQE
9
0.22%
MPO
8
0.19%
6OMT_4OMT_SOMT
7
0.17%
CNMT
7
0.17%
CYP80B1
7
0.17%
TYDC_DDC
6
0.14%
CHS
6
0.14%
FLS
6
0.14%
CPR
6
0.14%
AACT
6
0.14%
FPPS
6
0.14%
HPPR
5
0.12%
GGPPS
5
0.12%
ODC
4
0.1%
XMT_MXMT_DXMT
4
0.1%
CHI
4
0.1%
DET2
4
0.1%
SQS/FDFT1
4
0.1%
HMGR
4
0.1%
DXS
4
0.1%
CYP719
3
0.07%
SMO1/SMO2
3
0.07%
MVD
3
0.07%
MVK
3
0.07%
PMK
3
0.07%
MCT/IspD
3
0.07%
CYP80F1
2
0.05%
TDC
2
0.05%
HYD1
2
0.05%
DWF5
2
0.05%
FK
2
0.05%
DXR
2
0.05%
HDR/IspH
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
CPI1
1
0.02%
DWF1
1
0.02%
HMGS
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 577 | 18 | UGT (221) | View species results |
| Alkaloid pathway | 425 | 26 | 7DLGT (113) | View species results |
| Phenylpropanoid pathway | 315 | 12 | POD (100) | View species results |
| Flavonoid pathway | 212 | 15 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 158 | 7 | C4H (57) | View species results |
| Steroid pathway | 75 | 13 | CAS (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1551 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pav_sc0011125.1_g010.1.br:mrna | Rosmarinic Acid | C4H | medium | pass |
| Pav_sc0011125.1_g020.1.br:CDS:1 | Rosmarinic Acid | C4H | low | borderline |
| Pav_sc0011990.1_g010.1.br:CDS:1 | Rosmarinic Acid | C4H | medium | pass |
| Pav_sc0000067.1_g630.1.br:CDS:1 | Rosmarinic Acid | CPR | low | borderline |
| Pav_sc0000359.1_g390.1.mk:mrna | Rosmarinic Acid | CPR | medium | pass |
| Pav_sc0000618.1_g150.1.mk:mrna | Rosmarinic Acid | CPR | medium | pass |
| Pav_sc0001243.1_g560.1.br:mrna | Rosmarinic Acid | CPR | low | borderline |
| Pav_sc0001503.1_g130.1.mk:mrna | Rosmarinic Acid | CPR | medium | pass |
| Pav_sc0002456.1_g230.1.mk:mrna | Rosmarinic Acid | CPR | medium | pass |
| Pav_sc0000072.1_g540.1.mk:CDS:1 | Rosmarinic Acid | HPPR | medium | pass |
| Pav_sc0000072.1_g620.1.br:mrna | Rosmarinic Acid | HPPR | medium | pass |
| Pav_sc0001710.1_g790.1.mk:mrna | Rosmarinic Acid | HPPR | low | borderline |
| Pav_sc0001963.1_g550.1.br:mrna | Rosmarinic Acid | HPPR | medium | pass |
| Pav_sc0005470.1_g020.1.mk:mrna | Rosmarinic Acid | HPPR | medium | pass |
| Pav_co4071347.1_g010.1.mk:CDS:1 | Rosmarinic Acid | PAL | high | pass |
| Pav_sc0000084.1_g560.1.mk:mrna | Rosmarinic Acid | PAL | high | pass |
| Pav_sc0000711.1_g010.1.mk:mrna | Rosmarinic Acid | PAL | medium | pass |
| Pav_co4003859.1_g020.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_co4055849.1_g010.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000100.1_g550.1.mk:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000100.1_g580.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000143.1_g280.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000212.1_g300.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000243.1_g290.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000464.1_g780.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000558.1_g990.1.mk:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000624.1_g2170.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000628.1_g300.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000678.1_g010.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000678.1_g020.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000678.1_g120.1.mk:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0000890.1_g630.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0000981.1_g560.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | borderline |
| Pav_sc0001059.1_g580.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0001080.1_g730.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0001309.1_g480.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0001709.1_g010.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0001774.1_g090.1.mk:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0002119.1_g110.1.br:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0002727.1_g230.1.mk:mrna | Rosmarinic Acid | RAS | low | borderline |
| Pav_sc0002792.1_g140.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0002792.1_g160.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0002984.1_g060.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0002984.1_g070.1.mk:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0003326.1_g030.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0003326.1_g160.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0003326.1_g180.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0003326.1_g220.1.mk:CDS:1 | Rosmarinic Acid | RAS | medium | borderline |
| Pav_sc0005055.1_g010.1.br:mrna | Rosmarinic Acid | RAS | medium | pass |
| Pav_sc0008177.1_g020.1.br:CDS:1 | Rosmarinic Acid | RAS | medium | pass |