PlantSME Plant secondary metabolism enzyme database

Prunus avium (prunus_avium)

Imported from atlas release summary for Prunus avium.

2014
Candidate Protein Records
1762
Pathway-Level Records
4155
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 32.75% Alkaloid pathway 24.12% Phenylpropanoid pathway 17.88% Flavonoid pathway 12.03% Rosmarinic acid pathway 8.97% Steroid pathway 4.26%
Family Distribution
C4H 7.03% BAHD 5.97% UGT 5.8% C3'H/CYP98A 5.49% 7DLGT 4.31% CYP76 4.12% IFS 4.04% UFGT 3.92%
Other Families 59.33%
More Families (96)
POD 119 2.86% T3O 118 2.84% F3H 113 2.72% 4CL 108 2.6% DWF4/CYP90B1 86 2.07% NMT 76 1.83% CAD 75 1.81% H6H 73 1.76% STR 64 1.54% CODM/T6ODM 61 1.47% F3'H/CYP75B 61 1.47% BR6OX2/CYP85A2 61 1.47% SGD 58 1.4% HCT 56 1.35% GS 55 1.32% TAT 53 1.28% TPS 51 1.23% G8O/G8H 49 1.18% T16H 48 1.16% GES 44 1.06% CAS 43 1.03% CSE 42 1.01% LAC 41 0.99% CYP71 38 0.91% TRI/TRII 37 0.89% BBE 37 0.89% FNS 36 0.87% CYP90D1 36 0.87% COMT 35 0.84% IO 33 0.79% 7DLH 33 0.79% RAS 33 0.79% SMT1/SMT2/SMT3 32 0.77% CCR 28 0.67% NCS 27 0.65% ANR 26 0.63% IFR 26 0.63% PMT 24 0.58% F3'5'H/CYP75A 23 0.55% BR6OX1/CYP85A1 22 0.53% 16OMT 21 0.51% LAMT 21 0.51% F5H/CYP84A 21 0.51% PYKS 18 0.43% DFR 18 0.43% CPD/CYP90A1 16 0.39% COR 15 0.36% SLS 14 0.34% 8HGO 14 0.34% ANS/LDOX 12 0.29% DWF7 12 0.29% CCoAOMT 11 0.26% CYP51G1 11 0.26% ROT3/CYP90C1 10 0.24% ISY 9 0.22% PAL 9 0.22% SQE 9 0.22% MPO 8 0.19% 6OMT_4OMT_SOMT 7 0.17% CNMT 7 0.17% CYP80B1 7 0.17% TYDC_DDC 6 0.14% CHS 6 0.14% FLS 6 0.14% CPR 6 0.14% AACT 6 0.14% FPPS 6 0.14% HPPR 5 0.12% GGPPS 5 0.12% ODC 4 0.1% XMT_MXMT_DXMT 4 0.1% CHI 4 0.1% DET2 4 0.1% SQS/FDFT1 4 0.1% HMGR 4 0.1% DXS 4 0.1% CYP719 3 0.07% SMO1/SMO2 3 0.07% MVD 3 0.07% MVK 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CYP80F1 2 0.05% TDC 2 0.05% HYD1 2 0.05% DWF5 2 0.05% FK 2 0.05% DXR 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% ADC 1 0.02% CPI1 1 0.02% DWF1 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 577 18 UGT (221) View species results
Alkaloid pathway 425 26 7DLGT (113) View species results
Phenylpropanoid pathway 315 12 POD (100) View species results
Flavonoid pathway 212 15 UFGT (141) View species results
Rosmarinic acid pathway 158 7 C4H (57) View species results
Steroid pathway 75 13 CAS (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1551 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Pav_sc0010284.1_g010.1.mk:mrna Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
Pav_sc0010340.1_g010.1.br:CDS:1 Terpenoid UGT medium pass UGT__00030__sp_D3UAG3_U88F2_PYRCO
Pav_sc0010427.1_g010.1.br:CDS:1 Terpenoid UGT medium pass UGT__00028__sp_D3UAG1_U7A16_PYRCO
Pav_sc0010778.1_g010.1.br:CDS:1 Terpenoid UGT medium pass UGT__00028__sp_D3UAG1_U7A16_PYRCO
Pav_sc0011987.1_g020.1.mk:mrna Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH