Syntrichia ruralis (syntrichia_ruralis)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 25.81% Phenylpropanoid pathway 25.65% Alkaloid pathway 19.82% Flavonoid pathway 12.94% Rosmarinic acid pathway 10.03% Steroid pathway 5.74%

Family Distribution

3266 Family-Level Calls

C4H 7.35% C3'H/CYP98A 6.77% CYP76 5.36% BAHD 4.75% POD 4.44% 4CL 4.41% NMT 3.83% PAL 3.4%

Other Families 59.71%

More Families (97)

IFS 95 2.91% F3'H/CYP75B 90 2.76% BR6OX2/CYP85A2 88 2.69% DWF4/CYP90B1 88 2.69% STR 74 2.27% T3O 71 2.17% IFR 66 2.02% UGT 64 1.96% GS 61 1.87% 7DLGT 61 1.87% UFGT 61 1.87% IO 55 1.68% F3H 49 1.5% PYKS 46 1.41% G8O/G8H 45 1.38% CYP71 39 1.19% F3'5'H/CYP75A 37 1.13% CAD 35 1.07% CODM/T6ODM 33 1.01% CAS 32 0.98% SMT1/SMT2/SMT3 31 0.95% TRI/TRII 30 0.92% CHS 30 0.92% COMT 29 0.89% LAC 27 0.83% T16H 26 0.8% FNS 26 0.8% SLS 23 0.7% 7DLH 23 0.7% H6H 22 0.67% CYP80B1 20 0.61% ANR 20 0.61% CSE 17 0.52% HCT 17 0.52% SGD 16 0.49% CYP90D1 16 0.49% SQS/FDFT1 15 0.46% CPD/CYP90A1 15 0.46% AACT 15 0.46% RAS 14 0.43% PMT 13 0.4% COR 13 0.4% BBE 13 0.4% F5H/CYP84A 13 0.4% BR6OX1/CYP85A1 13 0.4% NCS 12 0.37% 8HGO 11 0.34% 16OMT 11 0.34% CCoAOMT 11 0.34% DET2 11 0.34% TDC 10 0.31% LAMT 10 0.31% DXS 10 0.31% TAT 9 0.28% SQE 8 0.24% DXR 8 0.24% CNMT 7 0.21% ANS/LDOX 7 0.21% CCR 7 0.21% CPR 7 0.21% IDI 7 0.21% GGPPS 7 0.21% MVK 6 0.18% MCT/IspD 6 0.18% TYDC_DDC 5 0.15% CHI 5 0.15% DFR 5 0.15% MPO 4 0.12% ADC 4 0.12% CYP719 4 0.12% ROT3/CYP90C1 4 0.12% DWF5 4 0.12% MVD 4 0.12% HDS/IspG 4 0.12% MDS/IspF 4 0.12% TPS 4 0.12% CMK/IspE 4 0.12% HDR/IspH 4 0.12% 6OMT_4OMT_SOMT 3 0.09% ISY 3 0.09% HPPR 3 0.09% CPI1 3 0.09% HYD1 3 0.09% SMO1/SMO2 3 0.09% FPPS 3 0.09% XMT_MXMT_DXMT 2 0.06% FLS 2 0.06% DWF1 2 0.06% DWF7 2 0.06% HMGR 2 0.06% PMK 2 0.06% CYP80F1 1 0.03% GES 1 0.03% CYP51G1 1 0.03% FK 1 0.03% HMGS 1 0.03% GPPS 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	319	20	BAHD (105)	View species results
Phenylpropanoid pathway	317	11	POD (139)	View species results
Alkaloid pathway	245	17	NMT (47)	View species results
Flavonoid pathway	160	11	UFGT (55)	View species results
Rosmarinic acid pathway	124	7	C4H (42)	View species results
Steroid pathway	71	12	CAS (28)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	1403	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	186	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CYP76

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
Srurcontig_8100415760	Terpenoid	CYP76	medium	borderline	CYP76__00023__sp_S4UX02_CYPH1_SALMI
Srurcontig_8190420870	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Srurcontig_8380427520	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Srurcontig_8380427540	Terpenoid	CYP76	medium	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
Srurcontig_8380427550	Terpenoid	CYP76	low	borderline	CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Srurcontig_8520437340	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Srurcontig_8690447470	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Srurcontig_8900455160	Terpenoid	CYP76	medium	borderline	CYP76__00023__sp_S4UX02_CYPH1_SALMI
Srurcontig_8950457420	Terpenoid	CYP76	low	borderline	CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
Srurcontig_9160472140	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Srurcontig_9300478310	Terpenoid	CYP76	medium	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Srurcontig_9300478320	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Srurcontig_9300478340	Terpenoid	CYP76	medium	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Srurcontig_930476190	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Srurcontig_930476900	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Srurcontig_950483620	Terpenoid	CYP76	medium	pass	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
Srurcontig_9670488630	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Srurcontig_9700491570	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Srurcontig_9800496530	Terpenoid	CYP76	medium	pass	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Srurcontig_9800496680	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Srurcontig_9870498940	Terpenoid	CYP76	medium	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
Srurcontig_9870499020	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Srurcontig_9870499420	Terpenoid	CYP76	medium	borderline	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Srurcontig_9980503850	Terpenoid	CYP76	medium	pass	CYP76__00023__sp_S4UX02_CYPH1_SALMI
Srurcontig_9980504410	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC