PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Atha01G0021460.1 Alkaloid 16OMT medium borderline
Atha01G0021470.1 Alkaloid 16OMT medium borderline
Atha01G0021480.1 Alkaloid 16OMT medium borderline
Atha01G0021480.2 Alkaloid 16OMT medium borderline
Atha01G0021490.1 Alkaloid 16OMT medium borderline
Atha01G0032900.1 Alkaloid 16OMT medium borderline
Atha01G0042640.1 Alkaloid 16OMT medium borderline
Atha01G0042640.2 Alkaloid 16OMT medium borderline
Atha01G0052520.1 Alkaloid 16OMT medium borderline
Atha01G0052840.1 Alkaloid 16OMT medium borderline
Atha01G0052840.4 Alkaloid 16OMT medium borderline
Atha01G0067950.1 Alkaloid 16OMT medium borderline
Atha01G0067970.1 Alkaloid 16OMT medium borderline
Atha03G0043720.1 Alkaloid 16OMT medium borderline
Atha04G0036480.1 Alkaloid 16OMT medium borderline
Atha04G0036490.1 Alkaloid 16OMT medium borderline
Atha05G0030270.1 Alkaloid 16OMT medium borderline
Atha05G0030270.2 Alkaloid 16OMT medium borderline
Atha05G0030270.3 Alkaloid 16OMT medium borderline
Atha05G0048480.1 Alkaloid 16OMT medium borderline
Atha05G0048910.1 Alkaloid 16OMT medium borderline
Atha01G0000410.1 Alkaloid 7DLGT medium pass
Atha01G0000410.2 Alkaloid 7DLGT medium pass
Atha01G0000440.1 Alkaloid 7DLGT low borderline
Atha01G0000440.2 Alkaloid 7DLGT low borderline
Atha01G0004800.1 Alkaloid 7DLGT medium pass
Atha01G0004830.1 Alkaloid 7DLGT medium pass
Atha01G0004830.2 Alkaloid 7DLGT medium pass
Atha01G0004980.1 Alkaloid 7DLGT medium pass
Atha01G0004990.1 Alkaloid 7DLGT medium pass
Atha01G0005350.1 Alkaloid 7DLGT medium pass
Atha01G0006640.1 Alkaloid 7DLGT low borderline
Atha01G0006650.1 Alkaloid 7DLGT medium pass
Atha01G0006660.1 Alkaloid 7DLGT low borderline
Atha01G0010110.1 Alkaloid 7DLGT low borderline
Atha01G0022770.1 Alkaloid 7DLGT medium pass
Atha01G0022780.1 Alkaloid 7DLGT medium pass
Atha01G0022780.2 Alkaloid 7DLGT medium pass
Atha01G0022790.1 Alkaloid 7DLGT medium pass
Atha01G0022790.2 Alkaloid 7DLGT medium pass
Atha01G0022800.1 Alkaloid 7DLGT medium pass
Atha01G0022810.1 Alkaloid 7DLGT medium pass
Atha01G0024550.1 Alkaloid 7DLGT low borderline
Atha01G0030370.1 Alkaloid 7DLGT medium pass
Atha01G0031910.1 Alkaloid 7DLGT low borderline
Atha01G0041160.1 Alkaloid 7DLGT low borderline
Atha01G0041780.1 Alkaloid 7DLGT low borderline
Atha01G0054730.1 Alkaloid 7DLGT low borderline
Atha01G0054740.1 Alkaloid 7DLGT low borderline
Atha01G0064200.1 Alkaloid 7DLGT low borderline