PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Family-Level Assignments
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Atha01G0000410.1 Flavonoid UFGT high pass
Atha01G0000410.2 Flavonoid UFGT high pass
Atha01G0000440.1 Flavonoid UFGT medium pass
Atha01G0000440.2 Flavonoid UFGT medium pass
Atha01G0004800.1 Flavonoid UFGT medium pass
Atha01G0004830.1 Flavonoid UFGT medium pass
Atha01G0004830.2 Flavonoid UFGT medium pass
Atha01G0004980.1 Flavonoid UFGT medium pass
Atha01G0004990.1 Flavonoid UFGT medium pass
Atha01G0005350.1 Flavonoid UFGT medium pass
Atha01G0006640.1 Flavonoid UFGT high pass
Atha01G0006650.1 Flavonoid UFGT medium pass
Atha01G0006660.1 Flavonoid UFGT medium pass
Atha01G0010110.1 Flavonoid UFGT medium pass
Atha01G0022770.1 Flavonoid UFGT medium pass
Atha01G0022780.1 Flavonoid UFGT medium pass
Atha01G0022780.2 Flavonoid UFGT medium pass
Atha01G0022790.1 Flavonoid UFGT medium pass
Atha01G0022790.2 Flavonoid UFGT high pass
Atha01G0022800.1 Flavonoid UFGT medium pass
Atha01G0022810.1 Flavonoid UFGT medium pass
Atha01G0024550.1 Flavonoid UFGT medium pass
Atha01G0030370.1 Flavonoid UFGT high pass
Atha01G0036480.1 Flavonoid UFGT low borderline
Atha01G0036480.2 Flavonoid UFGT low borderline
Atha01G0036480.3 Flavonoid UFGT low borderline
Atha01G0036480.4 Flavonoid UFGT low borderline
Atha01G0036480.5 Flavonoid UFGT low borderline
Atha01G0036480.6 Flavonoid UFGT low borderline
Atha01G0036480.7 Flavonoid UFGT low borderline
Atha01G0036480.8 Flavonoid UFGT low borderline
Atha01G0041160.1 Flavonoid UFGT high pass
Atha01G0041780.1 Flavonoid UFGT medium pass
Atha01G0054730.1 Flavonoid UFGT high pass
Atha01G0054740.1 Flavonoid UFGT high pass
Atha01G0064200.1 Flavonoid UFGT medium pass
Atha01G0068740.1 Flavonoid UFGT medium pass
Atha02G0008690.1 Flavonoid UFGT medium pass
Atha02G0008690.2 Flavonoid UFGT medium pass
Atha02G0008700.1 Flavonoid UFGT medium pass
Atha02G0008700.2 Flavonoid UFGT medium pass
Atha02G0009810.1 Flavonoid UFGT medium pass
Atha02G0009810.2 Flavonoid UFGT medium pass
Atha02G0011610.1 Flavonoid UFGT high pass
Atha02G0011620.1 Flavonoid UFGT high pass
Atha02G0015890.1 Flavonoid UFGT medium pass
Atha02G0016250.1 Flavonoid UFGT high pass
Atha02G0016250.2 Flavonoid UFGT medium pass
Atha02G0016630.1 Flavonoid UFGT medium pass
Atha02G0016640.1 Flavonoid UFGT medium pass