PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Atha01G0055580.1 Flavonoid C4H low borderline
Atha02G0024140.1 Flavonoid C4H medium borderline
Atha03G0032050.1 Flavonoid C4H low borderline
Atha04G0014350.1 Flavonoid C4H low borderline
Atha04G0014350.2 Flavonoid C4H low borderline
Atha04G0014350.3 Flavonoid C4H low borderline
Atha04G0014450.1 Flavonoid C4H low borderline
Atha04G0014460.1 Flavonoid C4H low borderline
Atha04G0014460.2 Flavonoid C4H low borderline
Atha04G0014460.3 Flavonoid C4H low borderline
Atha05G0024990.1 Flavonoid C4H medium borderline
Atha01G0000190.1 Rosmarinic Acid C4H low borderline
Atha01G0000190.2 Rosmarinic Acid C4H low borderline
Atha01G0000280.1 Rosmarinic Acid C4H low borderline
Atha01G0004420.1 Rosmarinic Acid C4H low borderline
Atha01G0004420.2 Rosmarinic Acid C4H low borderline
Atha01G0011460.1 Rosmarinic Acid C4H low borderline
Atha01G0011480.1 Rosmarinic Acid C4H medium pass
Atha01G0011480.2 Rosmarinic Acid C4H low borderline
Atha01G0013060.1 Rosmarinic Acid C4H low borderline
Atha01G0013060.2 Rosmarinic Acid C4H medium pass
Atha01G0013070.1 Rosmarinic Acid C4H medium pass
Atha01G0013070.2 Rosmarinic Acid C4H low borderline
Atha01G0013080.1 Rosmarinic Acid C4H medium pass
Atha01G0013090.1 Rosmarinic Acid C4H low borderline
Atha01G0013120.1 Rosmarinic Acid C4H low borderline
Atha01G0013120.2 Rosmarinic Acid C4H low borderline
Atha01G0013140.1 Rosmarinic Acid C4H low borderline
Atha01G0013760.1 Rosmarinic Acid C4H low borderline
Atha01G0016600.1 Rosmarinic Acid C4H low borderline
Atha01G0016610.1 Rosmarinic Acid C4H low borderline
Atha01G0016610.2 Rosmarinic Acid C4H low borderline
Atha01G0019910.1 Rosmarinic Acid C4H low borderline
Atha01G0019910.3 Rosmarinic Acid C4H low borderline
Atha01G0025070.1 Rosmarinic Acid C4H low borderline
Atha01G0028450.1 Rosmarinic Acid C4H low borderline
Atha01G0033440.1 Rosmarinic Acid C4H low borderline
Atha01G0033440.2 Rosmarinic Acid C4H low borderline
Atha01G0033440.3 Rosmarinic Acid C4H low borderline
Atha01G0033440.4 Rosmarinic Acid C4H low borderline
Atha01G0033440.5 Rosmarinic Acid C4H low borderline
Atha01G0033450.1 Rosmarinic Acid C4H medium pass
Atha01G0033450.2 Rosmarinic Acid C4H medium pass
Atha01G0034290.1 Rosmarinic Acid C4H low borderline
Atha01G0038200.1 Rosmarinic Acid C4H low borderline
Atha01G0041110.1 Rosmarinic Acid C4H low borderline
Atha01G0041130.1 Rosmarinic Acid C4H medium pass
Atha01G0046990.1 Rosmarinic Acid C4H low borderline
Atha01G0046990.2 Rosmarinic Acid C4H low borderline
Atha01G0048070.1 Rosmarinic Acid C4H low borderline