PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.99% Alkaloid pathway 25.36% Phenylpropanoid pathway 18.38% Flavonoid pathway 10.05% Steroid pathway 10.05% Rosmarinic acid pathway 7.17%
Family Distribution
BAHD 6.17% C4H 5.9% C3'H/CYP98A 5.73% 4CL 4.14% CYP76 3.81% IFS 3.71% POD 3.61% NMT 3.42%
Other Families 63.52%
More Families (95)
T3O 158 3.07% UFGT 148 2.87% UGT 144 2.8% F3H 143 2.78% DWF4/CYP90B1 139 2.7% 7DLGT 137 2.66% SMT1/SMT2/SMT3 123 2.39% SGD 108 2.1% BR6OX2/CYP85A2 97 1.88% CAS 96 1.86% CODM/T6ODM 87 1.69% F3'H/CYP75B 86 1.67% STR 82 1.59% CYP71 78 1.51% TRI/TRII 74 1.44% CAD 64 1.24% T16H 62 1.2% H6H 56 1.09% IFR 53 1.03% CSE 50 0.97% TPS 50 0.97% GES 48 0.93% IO 46 0.89% FNS 44 0.85% LAMT 40 0.78% ANR 39 0.76% CYP90D1 39 0.76% LAC 38 0.74% F5H/CYP84A 37 0.72% PYKS 35 0.68% SLS 35 0.68% CCR 34 0.66% BBE 33 0.64% NCS 33 0.64% COMT 32 0.62% 8HGO 31 0.6% GS 31 0.6% RAS 31 0.6% TAT 31 0.6% G8O/G8H 28 0.54% CNMT 28 0.54% F3'5'H/CYP75A 26 0.5% CPD/CYP90A1 26 0.5% HCT 25 0.49% 16OMT 21 0.41% PMT 21 0.41% GGPPS 20 0.39% 7DLH 19 0.37% COR 17 0.33% ANS/LDOX 17 0.33% CPR 17 0.33% BR6OX1/CYP85A1 17 0.33% CYP51G1 16 0.31% PAL 15 0.29% FPPS 15 0.29% AACT 14 0.27% DFR 13 0.25% CCoAOMT 13 0.25% CYP719 12 0.23% SQE 12 0.23% MPO 11 0.21% TYDC_DDC 11 0.21% SMO1/SMO2 11 0.21% MVK 11 0.21% ROT3/CYP90C1 10 0.19% DXS 10 0.19% SQS/FDFT1 9 0.17% CHI 8 0.16% DET2 7 0.14% MCT/IspD 7 0.14% ISY 6 0.12% DWF7 6 0.12% MVD 6 0.12% CYP80F1 5 0.1% CHS 5 0.1% FLS 5 0.1% HPPR 5 0.1% CMK/IspE 5 0.1% HDS/IspG 5 0.1% XMT_MXMT_DXMT 4 0.08% CYP80B1 4 0.08% HYD1 4 0.08% DWF1 4 0.08% FK 4 0.08% ADC 3 0.06% CPI1 3 0.06% IDI 3 0.06% HMGS 3 0.06% TDC 2 0.04% DWF5 2 0.04% PMK 2 0.04% MDS/IspF 2 0.04% HMGR 2 0.04% DXR 2 0.04% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
Atha01G0016160.7 Flavonoid DFR low borderline
Atha01G0022730.2 Flavonoid DFR low borderline
Atha01G0058630.2 Flavonoid DFR medium pass
Atha02G0001460.1 Flavonoid DFR medium borderline
Atha02G0017200.1 Flavonoid DFR medium borderline
Atha02G0017200.2 Flavonoid DFR medium borderline
Atha02G0017200.3 Flavonoid DFR medium borderline
Atha02G0017200.4 Flavonoid DFR medium borderline
Atha02G0040270.4 Flavonoid DFR medium borderline
Atha04G0031330.1 Flavonoid DFR low borderline
Atha04G0036760.1 Flavonoid DFR medium borderline
Atha05G0027730.1 Flavonoid DFR medium borderline
Atha05G0027730.2 Flavonoid DFR medium borderline