PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Atha01G0000190.1 Alkaloid IO medium borderline
Atha01G0000190.2 Alkaloid IO medium borderline
Atha01G0011550.1 Alkaloid IO medium borderline
Atha01G0016610.1 Alkaloid IO medium borderline
Atha01G0016610.2 Alkaloid IO medium borderline
Atha01G0019910.2 Alkaloid IO medium pass
Atha01G0048560.1 Alkaloid IO medium borderline
Atha01G0056510.1 Alkaloid IO medium borderline
Atha01G0056510.2 Alkaloid IO medium borderline
Atha01G0063640.1 Alkaloid IO medium borderline
Atha01G0068950.2 Alkaloid IO low borderline
Atha01G0069870.1 Alkaloid IO medium pass
Atha02G0004070.1 Alkaloid IO medium borderline
Atha02G0015630.1 Alkaloid IO medium pass
Atha02G0015630.2 Alkaloid IO medium pass
Atha02G0016600.1 Alkaloid IO medium borderline
Atha02G0018500.1 Alkaloid IO medium borderline
Atha02G0019640.1 Alkaloid IO medium borderline
Atha02G0019640.2 Alkaloid IO medium borderline
Atha02G0037590.2 Alkaloid IO low borderline
Atha02G0041630.1 Alkaloid IO medium borderline
Atha03G0010260.1 Alkaloid IO medium borderline
Atha03G0041100.2 Alkaloid IO low borderline
Atha03G0043530.1 Alkaloid IO medium borderline
Atha03G0043530.2 Alkaloid IO medium borderline
Atha03G0052870.1 Alkaloid IO medium borderline
Atha03G0052870.2 Alkaloid IO medium borderline
Atha04G0014350.1 Alkaloid IO medium borderline
Atha04G0014350.2 Alkaloid IO medium borderline
Atha04G0014350.3 Alkaloid IO medium borderline
Atha04G0014530.1 Alkaloid IO low borderline
Atha04G0022820.1 Alkaloid IO medium borderline
Atha04G0022840.1 Alkaloid IO medium borderline
Atha04G0037770.2 Alkaloid IO low borderline
Atha04G0038820.1 Alkaloid IO medium borderline
Atha04G0038890.1 Alkaloid IO medium borderline
Atha04G0041590.1 Alkaloid IO medium pass
Atha04G0041590.2 Alkaloid IO medium pass
Atha05G0003920.1 Alkaloid IO medium borderline
Atha05G0004570.2 Alkaloid IO high pass
Atha05G0005070.2 Alkaloid IO low borderline
Atha05G0006360.1 Alkaloid IO medium borderline
Atha05G0024060.2 Alkaloid IO medium borderline
Atha05G0029160.1 Alkaloid IO medium borderline
Atha05G0029320.2 Alkaloid IO low borderline
Atha05G0032230.2 Alkaloid IO low borderline