PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Atha01G0055580.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha01G0068950.2 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0019640.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0022460.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0022680.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0022680.2 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0022680.4 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0028540.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha02G0028550.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha03G0026730.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha03G0032050.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha03G0035100.2 Steroid BR6OX1/CYP85A1 medium borderline
Atha04G0035920.1 Steroid BR6OX1/CYP85A1 low borderline
Atha05G0024010.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha05G0024280.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha05G0036580.1 Steroid BR6OX1/CYP85A1 low borderline
Atha05G0038580.1 Steroid BR6OX1/CYP85A1 medium borderline
Atha01G0000190.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0000190.2 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0000280.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0000630.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0011460.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0011480.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0011480.2 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0013080.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0013140.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0013760.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033440.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033440.2 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033440.3 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033440.4 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033440.5 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0038200.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0041110.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0041130.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0048550.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0053450.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0054750.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0064480.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0065510.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0007640.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0015200.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0020490.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0021250.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0024140.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0024410.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0035410.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0037590.1 Steroid BR6OX2/CYP85A2 medium borderline
Atha02G0037590.2 Steroid BR6OX2/CYP85A2 medium borderline
Atha02G0040480.1 Steroid BR6OX2/CYP85A2 medium borderline