PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Atha02G0040480.2 Steroid BR6OX2/CYP85A2 medium borderline
Atha02G0040870.1 Steroid BR6OX2/CYP85A2 low borderline
Atha02G0041630.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0001110.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0002850.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0010250.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0010260.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0014940.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0014950.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.3 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.4 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.5 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021010.6 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021020.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021020.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021030.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021050.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021050.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021050.3 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021050.4 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021060.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021060.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021070.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021960.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021970.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021980.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0021980.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0027770.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0027820.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0027830.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0027840.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0027840.2 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0028590.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0052870.1 Steroid BR6OX2/CYP85A2 low borderline
Atha03G0052870.2 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0000500.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0010710.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0010720.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0010730.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0010740.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0012360.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0014380.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0014380.2 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0014410.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0014430.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0014450.1 Steroid BR6OX2/CYP85A2 medium borderline
Atha04G0014460.1 Steroid BR6OX2/CYP85A2 medium borderline
Atha04G0014460.3 Steroid BR6OX2/CYP85A2 medium borderline