PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Atha04G0020020.2 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0038820.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0041050.1 Steroid BR6OX2/CYP85A2 low borderline
Atha04G0041060.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0003590.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0006350.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0007780.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0007780.2 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0009220.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0029430.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0029430.2 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0036100.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0042200.1 Steroid BR6OX2/CYP85A2 low borderline
Atha05G0053970.1 Steroid BR6OX2/CYP85A2 low borderline
Atha01G0033460.1 Steroid CAS low borderline
Atha01G0050670.1 Steroid CAS low borderline
Atha01G0051300.1 Steroid CAS low borderline
Atha01G0051300.2 Steroid CAS low borderline
Atha01G0056930.1 Steroid CAS medium pass
Atha01G0056930.2 Steroid CAS medium pass
Atha01G0056930.3 Steroid CAS medium pass
Atha01G0056930.4 Steroid CAS medium pass
Atha01G0060290.1 Steroid CAS low borderline
Atha01G0068940.1 Steroid CAS medium pass
Atha01G0068960.1 Steroid CAS medium pass
Atha01G0068960.2 Steroid CAS medium pass
Atha01G0069460.1 Steroid CAS medium pass
Atha01G0069460.2 Steroid CAS medium pass
Atha01G0069470.1 Steroid CAS medium pass
Atha01G0069470.2 Steroid CAS medium pass
Atha01G0069470.3 Steroid CAS medium pass
Atha01G0069470.4 Steroid CAS medium pass
Atha01G0069470.5 Steroid CAS medium pass
Atha01G0069480.1 Steroid CAS medium pass
Atha01G0069480.2 Steroid CAS medium pass
Atha01G0069480.3 Steroid CAS medium pass
Atha01G0069480.4 Steroid CAS medium pass
Atha01G0069480.5 Steroid CAS medium pass
Atha01G0069490.1 Steroid CAS medium pass
Atha01G0069490.2 Steroid CAS medium pass
Atha01G0069490.3 Steroid CAS medium pass
Atha02G0005020.1 Steroid CAS medium pass
Atha02G0005020.2 Steroid CAS medium pass
Atha02G0016610.1 Steroid CAS low borderline
Atha02G0016610.2 Steroid CAS low borderline
Atha02G0017520.1 Steroid CAS medium pass
Atha02G0038570.1 Steroid CAS medium pass
Atha02G0038570.2 Steroid CAS medium pass
Atha03G0003010.1 Steroid CAS medium pass
Atha03G0004460.1 Steroid CAS medium pass