PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
Atha01G0020370.1 Rosmarinic Acid RAS low borderline
Atha01G0027580.1 Rosmarinic Acid RAS medium pass
Atha01G0027970.1 Rosmarinic Acid RAS low borderline
Atha01G0066190.1 Rosmarinic Acid RAS low borderline
Atha02G0010800.1 Rosmarinic Acid RAS low borderline
Atha02G0010800.2 Rosmarinic Acid RAS low borderline
Atha02G0012150.1 Rosmarinic Acid RAS medium pass
Atha02G0034690.1 Rosmarinic Acid RAS low borderline
Atha02G0039580.1 Rosmarinic Acid RAS low borderline
Atha03G0025280.1 Rosmarinic Acid RAS low borderline
Atha03G0038240.1 Rosmarinic Acid RAS low borderline
Atha03G0038240.2 Rosmarinic Acid RAS low borderline
Atha03G0041770.1 Rosmarinic Acid RAS low borderline
Atha04G0012430.1 Rosmarinic Acid RAS low borderline
Atha04G0029680.1 Rosmarinic Acid RAS low borderline
Atha04G0036340.1 Rosmarinic Acid RAS low borderline
Atha04G0036340.2 Rosmarinic Acid RAS low borderline
Atha04G0036340.3 Rosmarinic Acid RAS low borderline
Atha04G0036340.4 Rosmarinic Acid RAS low borderline
Atha04G0036340.5 Rosmarinic Acid RAS low borderline
Atha04G0037380.1 Rosmarinic Acid RAS low borderline
Atha05G0006540.1 Rosmarinic Acid RAS medium pass
Atha05G0034430.1 Rosmarinic Acid RAS medium pass
Atha05G0034430.2 Rosmarinic Acid RAS medium pass
Atha05G0040020.1 Rosmarinic Acid RAS low borderline
Atha05G0043270.1 Rosmarinic Acid RAS medium pass
Atha05G0052870.1 Rosmarinic Acid RAS medium pass
Atha05G0054270.1 Rosmarinic Acid RAS low borderline
Atha05G0054270.2 Rosmarinic Acid RAS low borderline
Atha05G0058150.1 Rosmarinic Acid RAS low borderline
Atha05G0058150.2 Rosmarinic Acid RAS low borderline