PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Atha01G0000120.1 Alkaloid PYKS low borderline
Atha01G0001080.1 Alkaloid PYKS high pass
Atha01G0003380.1 Alkaloid PYKS low borderline
Atha01G0007170.1 Alkaloid PYKS low borderline
Atha01G0007170.2 Alkaloid PYKS low borderline
Atha01G0019730.1 Alkaloid PYKS low borderline
Atha01G0025730.1 Alkaloid PYKS low borderline
Atha01G0052270.1 Alkaloid PYKS low borderline
Atha01G0052270.2 Alkaloid PYKS low borderline
Atha01G0058620.1 Alkaloid PYKS low borderline
Atha01G0061450.1 Alkaloid PYKS low borderline
Atha02G0008370.1 Alkaloid PYKS low borderline
Atha02G0009260.1 Alkaloid PYKS low borderline
Atha02G0019710.1 Alkaloid PYKS low borderline
Atha02G0020100.1 Alkaloid PYKS low borderline
Atha02G0022230.1 Alkaloid PYKS low borderline
Atha02G0022230.2 Alkaloid PYKS low borderline
Atha02G0041690.1 Alkaloid PYKS low borderline
Atha03G0005630.1 Alkaloid PYKS low borderline
Atha03G0009920.1 Alkaloid PYKS low borderline
Atha03G0042700.1 Alkaloid PYKS low borderline
Atha03G0042700.2 Alkaloid PYKS low borderline
Atha04G0000050.1 Alkaloid PYKS high pass
Atha04G0012880.1 Alkaloid PYKS low borderline
Atha04G0012880.2 Alkaloid PYKS low borderline
Atha04G0035520.1 Alkaloid PYKS low borderline
Atha04G0035820.1 Alkaloid PYKS low borderline
Atha04G0035830.1 Alkaloid PYKS low borderline
Atha04G0036160.1 Alkaloid PYKS high pass
Atha04G0036160.2 Alkaloid PYKS high pass
Atha05G0003810.1 Alkaloid PYKS low borderline
Atha05G0012980.1 Alkaloid PYKS high pass
Atha05G0025590.1 Alkaloid PYKS low borderline
Atha05G0037520.1 Alkaloid PYKS low borderline
Atha05G0043440.1 Alkaloid PYKS low borderline