PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Family-Level Assignments
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status Best Target
Atha01G0002560.1 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Atha01G0024940.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha01G0024940.2 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha01G0024950.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha02G0012150.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha02G0034370.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha02G0034690.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha03G0027650.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha03G0031730.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha03G0032040.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha03G0039040.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha03G0053170.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha04G0014440.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha04G0014440.2 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0000240.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0006540.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha05G0007380.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0007390.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0022970.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0034430.1 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0034430.2 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0042160.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0043270.1 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Atha05G0052870.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Atha05G0058860.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC