PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha05G0051200.1 Alkaloid LAMT medium borderline
Atha05G0061990.1 Alkaloid LAMT medium borderline
Atha01G0031550.1 Alkaloid MPO medium pass
Atha01G0031560.1 Alkaloid MPO medium pass
Atha01G0031570.1 Alkaloid MPO medium pass
Atha01G0052430.1 Alkaloid MPO medium pass
Atha02G0037230.1 Alkaloid MPO high pass
Atha03G0033710.1 Alkaloid MPO medium pass
Atha04G0010680.1 Alkaloid MPO low borderline
Atha04G0010690.1 Alkaloid MPO low borderline
Atha04G0010700.1 Alkaloid MPO medium pass
Atha04G0010700.2 Alkaloid MPO medium pass
Atha04G0013890.1 Alkaloid MPO medium pass
Atha01G0001470.1 Alkaloid NCS medium borderline
Atha01G0001470.2 Alkaloid NCS medium borderline
Atha01G0029890.2 Alkaloid NCS medium borderline
Atha01G0034740.1 Alkaloid NCS medium borderline
Atha01G0034740.2 Alkaloid NCS medium borderline
Atha02G0012650.1 Alkaloid NCS medium borderline
Atha03G0036660.1 Alkaloid NCS medium borderline
Atha03G0036670.1 Alkaloid NCS medium borderline
Atha03G0036670.2 Alkaloid NCS medium borderline
Atha03G0036680.1 Alkaloid NCS medium borderline
Atha03G0036680.10 Alkaloid NCS medium borderline
Atha03G0036680.2 Alkaloid NCS medium borderline
Atha03G0036680.3 Alkaloid NCS medium borderline
Atha03G0036680.4 Alkaloid NCS medium borderline
Atha03G0036680.5 Alkaloid NCS medium borderline
Atha03G0036680.6 Alkaloid NCS medium borderline
Atha03G0036680.7 Alkaloid NCS medium borderline
Atha03G0036680.8 Alkaloid NCS medium borderline
Atha03G0036680.9 Alkaloid NCS medium borderline
Atha03G0040010.1 Alkaloid NCS medium borderline
Atha03G0040020.1 Alkaloid NCS medium borderline
Atha03G0040020.3 Alkaloid NCS medium borderline
Atha04G0016190.1 Alkaloid NCS medium borderline
Atha04G0016190.2 Alkaloid NCS medium borderline
Atha04G0016190.3 Alkaloid NCS medium borderline
Atha04G0016190.4 Alkaloid NCS medium borderline
Atha04G0016190.5 Alkaloid NCS medium borderline
Atha04G0016200.1 Alkaloid NCS medium borderline
Atha04G0021090.1 Alkaloid NCS medium borderline
Atha04G0021090.2 Alkaloid NCS medium borderline
Atha04G0021090.3 Alkaloid NCS medium borderline
Atha04G0023030.2 Alkaloid NCS medium borderline
Atha05G0037700.1 Alkaloid NCS medium borderline
Atha01G0000950.1 Alkaloid NMT low borderline
Atha01G0000950.2 Alkaloid NMT low borderline
Atha01G0000950.3 Alkaloid NMT low borderline
Atha01G0000950.4 Alkaloid NMT low borderline