PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha05G0024280.1 Alkaloid T3O medium borderline
Atha05G0028970.1 Alkaloid T3O medium borderline
Atha05G0029430.1 Alkaloid T3O medium borderline
Atha05G0029430.2 Alkaloid T3O medium borderline
Atha05G0032230.1 Alkaloid T3O medium pass
Atha05G0032230.3 Alkaloid T3O medium pass
Atha05G0032230.4 Alkaloid T3O medium pass
Atha05G0036180.1 Alkaloid T3O low borderline
Atha05G0038580.1 Alkaloid T3O medium borderline
Atha05G0039340.1 Alkaloid T3O medium pass
Atha05G0039340.2 Alkaloid T3O medium pass
Atha05G0042200.1 Alkaloid T3O medium borderline
Atha05G0042210.1 Alkaloid T3O medium pass
Atha05G0042210.2 Alkaloid T3O medium pass
Atha05G0042210.3 Alkaloid T3O medium pass
Atha05G0042210.4 Alkaloid T3O medium pass
Atha05G0042210.5 Alkaloid T3O medium pass
Atha05G0042210.6 Alkaloid T3O medium pass
Atha05G0042210.7 Alkaloid T3O medium pass
Atha05G0052250.1 Alkaloid T3O medium borderline
Atha05G0058750.1 Alkaloid T3O low borderline
Atha05G0058750.2 Alkaloid T3O low borderline
Atha05G0062970.1 Alkaloid T3O medium borderline
Atha01G0027910.1 Alkaloid TDC low borderline
Atha01G0036590.1 Alkaloid TDC low borderline
Atha01G0006840.1 Alkaloid TRI/TRII medium pass
Atha01G0006840.2 Alkaloid TRI/TRII medium pass
Atha01G0006850.1 Alkaloid TRI/TRII medium pass
Atha01G0040310.1 Alkaloid TRI/TRII medium borderline
Atha01G0040310.2 Alkaloid TRI/TRII medium borderline
Atha01G0042980.1 Alkaloid TRI/TRII medium pass
Atha01G0045770.1 Alkaloid TRI/TRII medium pass
Atha01G0045770.2 Alkaloid TRI/TRII medium pass
Atha02G0017480.1 Alkaloid TRI/TRII medium pass
Atha02G0017480.2 Alkaloid TRI/TRII medium pass
Atha02G0022750.1 Alkaloid TRI/TRII medium pass
Atha02G0022760.1 Alkaloid TRI/TRII medium pass
Atha02G0022830.1 Alkaloid TRI/TRII medium pass
Atha02G0022850.1 Alkaloid TRI/TRII medium pass
Atha02G0022850.2 Alkaloid TRI/TRII medium pass
Atha02G0022860.1 Alkaloid TRI/TRII medium pass
Atha02G0022860.2 Alkaloid TRI/TRII medium pass
Atha02G0022870.1 Alkaloid TRI/TRII medium pass
Atha02G0022870.2 Alkaloid TRI/TRII medium pass
Atha02G0022870.3 Alkaloid TRI/TRII medium pass
Atha02G0022870.4 Alkaloid TRI/TRII medium pass
Atha02G0022880.1 Alkaloid TRI/TRII medium pass
Atha02G0022880.2 Alkaloid TRI/TRII medium pass
Atha02G0022880.3 Alkaloid TRI/TRII medium pass
Atha02G0022890.1 Alkaloid TRI/TRII medium pass