PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha03G0014990.1 Flavonoid IFS low borderline
Atha03G0014990.2 Flavonoid IFS low borderline
Atha03G0014990.3 Flavonoid IFS low borderline
Atha03G0015020.1 Flavonoid IFS low borderline
Atha03G0015020.2 Flavonoid IFS low borderline
Atha03G0020100.1 Flavonoid IFS low borderline
Atha03G0020100.2 Flavonoid IFS low borderline
Atha03G0021010.1 Flavonoid IFS medium borderline
Atha03G0021010.2 Flavonoid IFS medium borderline
Atha03G0021010.3 Flavonoid IFS medium borderline
Atha03G0021010.4 Flavonoid IFS medium borderline
Atha03G0021010.5 Flavonoid IFS medium borderline
Atha03G0021010.6 Flavonoid IFS medium borderline
Atha03G0021020.1 Flavonoid IFS medium borderline
Atha03G0021020.2 Flavonoid IFS medium borderline
Atha03G0021030.1 Flavonoid IFS medium borderline
Atha03G0021040.1 Flavonoid IFS medium borderline
Atha03G0021050.1 Flavonoid IFS medium borderline
Atha03G0021050.2 Flavonoid IFS medium borderline
Atha03G0021050.3 Flavonoid IFS medium borderline
Atha03G0021050.4 Flavonoid IFS medium borderline
Atha03G0021060.1 Flavonoid IFS medium borderline
Atha03G0021060.2 Flavonoid IFS medium borderline
Atha03G0021070.1 Flavonoid IFS medium borderline
Atha03G0021950.1 Flavonoid IFS medium borderline
Atha03G0021960.1 Flavonoid IFS medium borderline
Atha03G0021970.1 Flavonoid IFS medium borderline
Atha03G0021980.1 Flavonoid IFS medium borderline
Atha03G0021980.2 Flavonoid IFS medium borderline
Atha03G0026730.1 Flavonoid IFS medium borderline
Atha03G0027770.1 Flavonoid IFS low borderline
Atha03G0027830.1 Flavonoid IFS medium borderline
Atha03G0027840.1 Flavonoid IFS medium borderline
Atha03G0027840.2 Flavonoid IFS medium borderline
Atha03G0027850.1 Flavonoid IFS medium borderline
Atha03G0027870.1 Flavonoid IFS medium borderline
Atha03G0027880.1 Flavonoid IFS medium borderline
Atha03G0027890.1 Flavonoid IFS medium borderline
Atha03G0027940.1 Flavonoid IFS medium borderline
Atha03G0027960.1 Flavonoid IFS medium borderline
Atha03G0027960.2 Flavonoid IFS medium borderline
Atha03G0027970.1 Flavonoid IFS medium borderline
Atha03G0027980.1 Flavonoid IFS medium borderline
Atha03G0027990.1 Flavonoid IFS medium borderline
Atha03G0028000.1 Flavonoid IFS medium borderline
Atha03G0030710.1 Flavonoid IFS medium borderline
Atha03G0031950.1 Flavonoid IFS low borderline
Atha03G0032490.1 Flavonoid IFS medium borderline
Atha03G0034230.1 Flavonoid IFS medium borderline
Atha03G0035100.2 Flavonoid IFS low borderline