PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha05G0037150.2 Alkaloid CODM/T6ODM medium borderline
Atha05G0046330.1 Alkaloid CODM/T6ODM medium borderline
Atha05G0048690.1 Alkaloid CODM/T6ODM medium borderline
Atha05G0048690.2 Alkaloid CODM/T6ODM medium borderline
Atha05G0053750.1 Alkaloid CODM/T6ODM medium borderline
Atha05G0054660.1 Alkaloid CODM/T6ODM medium borderline
Atha05G0054670.1 Alkaloid CODM/T6ODM medium borderline
Atha05G0054670.2 Alkaloid CODM/T6ODM medium borderline
Atha05G0058900.1 Alkaloid CODM/T6ODM medium borderline
Atha01G0049510.1 Alkaloid COR medium pass
Atha01G0049520.1 Alkaloid COR medium pass
Atha02G0032030.1 Alkaloid COR medium pass
Atha02G0032030.2 Alkaloid COR medium pass
Atha02G0032030.3 Alkaloid COR medium pass
Atha02G0032030.4 Alkaloid COR medium pass
Atha02G0032030.5 Alkaloid COR medium pass
Atha02G0032030.6 Alkaloid COR medium pass
Atha02G0032030.7 Alkaloid COR medium pass
Atha02G0032040.1 Alkaloid COR medium pass
Atha02G0032040.2 Alkaloid COR medium pass
Atha02G0032060.1 Alkaloid COR medium pass
Atha03G0044510.1 Alkaloid COR medium pass
Atha03G0044510.2 Alkaloid COR medium pass
Atha05G0000730.1 Alkaloid COR medium pass
Atha05G0000730.2 Alkaloid COR medium pass
Atha05G0057670.1 Alkaloid COR medium pass
Atha01G0054750.1 Alkaloid CYP719 medium borderline
Atha01G0054760.1 Alkaloid CYP719 medium borderline
Atha01G0059680.1 Alkaloid CYP719 medium borderline
Atha02G0006850.1 Alkaloid CYP719 medium borderline
Atha03G0027500.1 Alkaloid CYP719 low borderline
Atha03G0027500.2 Alkaloid CYP719 low borderline
Atha03G0027500.3 Alkaloid CYP719 low borderline
Atha04G0022490.1 Alkaloid CYP719 low borderline
Atha04G0022490.2 Alkaloid CYP719 low borderline
Atha05G0000980.1 Alkaloid CYP719 low borderline
Atha05G0003950.1 Alkaloid CYP719 low borderline
Atha05G0003950.2 Alkaloid CYP719 low borderline
Atha04G0010750.1 Alkaloid CYP80B1 low borderline
Atha05G0004570.1 Alkaloid CYP80B1 medium borderline
Atha05G0024990.1 Alkaloid CYP80B1 medium borderline
Atha05G0029170.1 Alkaloid CYP80B1 medium borderline
Atha01G0013120.1 Alkaloid CYP80F1 medium borderline
Atha01G0013120.2 Alkaloid CYP80F1 medium borderline
Atha01G0013140.1 Alkaloid CYP80F1 medium borderline
Atha01G0025070.1 Alkaloid CYP80F1 medium borderline
Atha03G0027770.1 Alkaloid CYP80F1 medium borderline
Atha01G0013070.2 Alkaloid G8O/G8H medium borderline
Atha01G0016600.1 Alkaloid G8O/G8H medium borderline
Atha01G0028450.1 Alkaloid G8O/G8H medium borderline