PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha05G0013480.2 Steroid DWF4/CYP90B1 medium borderline
Atha05G0013480.3 Steroid DWF4/CYP90B1 medium borderline
Atha05G0013480.4 Steroid DWF4/CYP90B1 medium borderline
Atha05G0022160.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0024010.2 Steroid DWF4/CYP90B1 low borderline
Atha05G0024220.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0024230.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0024240.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0024990.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0031670.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0031670.2 Steroid DWF4/CYP90B1 low borderline
Atha05G0032230.1 Steroid DWF4/CYP90B1 medium borderline
Atha05G0032230.2 Steroid DWF4/CYP90B1 medium borderline
Atha05G0032230.3 Steroid DWF4/CYP90B1 medium borderline
Atha05G0032230.4 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.1 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.2 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.3 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.4 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.5 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.6 Steroid DWF4/CYP90B1 medium borderline
Atha05G0042210.7 Steroid DWF4/CYP90B1 medium borderline
Atha05G0046970.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0052210.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0052250.1 Steroid DWF4/CYP90B1 low borderline
Atha05G0062970.1 Steroid DWF4/CYP90B1 low borderline
Atha01G0041020.1 Steroid DWF5 medium pass
Atha01G0041020.2 Steroid DWF5 medium pass
Atha02G0030180.1 Steroid DWF7 low borderline
Atha02G0030180.2 Steroid DWF7 low borderline
Atha02G0030180.3 Steroid DWF7 low borderline
Atha03G0001870.1 Steroid DWF7 medium pass
Atha03G0001880.1 Steroid DWF7 medium pass
Atha03G0001880.2 Steroid DWF7 medium pass
Atha03G0043490.1 Steroid FK high pass
Atha03G0043490.2 Steroid FK medium pass
Atha04G0024840.1 Steroid FK low borderline
Atha04G0024840.2 Steroid FK low borderline
Atha01G0020320.1 Steroid HYD1 high pass
Atha05G0055480.1 Steroid HYD1 low borderline
Atha05G0055480.2 Steroid HYD1 low borderline
Atha05G0055480.3 Steroid HYD1 low borderline
Atha01G0004420.1 Steroid ROT3/CYP90C1 medium borderline
Atha01G0004420.2 Steroid ROT3/CYP90C1 medium borderline
Atha01G0035260.1 Steroid ROT3/CYP90C1 low borderline
Atha02G0019640.2 Steroid ROT3/CYP90C1 medium borderline
Atha02G0026300.1 Steroid ROT3/CYP90C1 medium borderline
Atha02G0026300.2 Steroid ROT3/CYP90C1 medium borderline
Atha03G0041100.1 Steroid ROT3/CYP90C1 medium borderline
Atha03G0041100.2 Steroid ROT3/CYP90C1 medium borderline