PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Atha02G0011670.1 Terpenoid GGPPS medium borderline
Atha02G0017120.1 Terpenoid GGPPS medium borderline
Atha02G0028690.1 Terpenoid GGPPS medium borderline
Atha02G0028690.2 Terpenoid GGPPS medium borderline
Atha03G0014830.1 Terpenoid GGPPS medium borderline
Atha03G0014850.1 Terpenoid GGPPS medium borderline
Atha03G0014870.1 Terpenoid GGPPS medium borderline
Atha03G0014870.2 Terpenoid GGPPS medium borderline
Atha03G0014870.3 Terpenoid GGPPS medium borderline
Atha03G0021100.1 Terpenoid GGPPS medium borderline
Atha03G0021100.2 Terpenoid GGPPS medium borderline
Atha03G0031560.1 Terpenoid GGPPS medium borderline
Atha03G0032480.1 Terpenoid GGPPS medium borderline
Atha04G0038230.1 Terpenoid GGPPS medium borderline
Atha04G0040030.1 Terpenoid GGPPS medium borderline
Atha04G0035640.1 Terpenoid HDR/IspH high pass
Atha05G0055780.1 Terpenoid HDS/IspG high pass
Atha05G0055780.2 Terpenoid HDS/IspG high pass
Atha05G0055780.3 Terpenoid HDS/IspG high pass
Atha05G0055780.4 Terpenoid HDS/IspG high pass
Atha05G0055780.5 Terpenoid HDS/IspG high pass
Atha01G0066860.1 Terpenoid HMGR medium pass
Atha02G0010340.1 Terpenoid HMGR medium pass
Atha04G0010240.1 Terpenoid HMGS high pass
Atha04G0010240.2 Terpenoid HMGS high pass
Atha04G0010240.3 Terpenoid HMGS high pass
Atha03G0002100.1 Terpenoid IDI medium pass
Atha03G0002100.2 Terpenoid IDI medium pass
Atha05G0015630.1 Terpenoid IDI medium pass
Atha01G0030950.1 Terpenoid MCT/IspD low borderline
Atha01G0030950.2 Terpenoid MCT/IspD low borderline
Atha02G0001550.1 Terpenoid MCT/IspD medium pass
Atha02G0001570.1 Terpenoid MCT/IspD high pass
Atha02G0001570.2 Terpenoid MCT/IspD high pass
Atha02G0029080.1 Terpenoid MCT/IspD low borderline
Atha03G0013230.1 Terpenoid MCT/IspD low borderline
Atha01G0053680.1 Terpenoid MDS/IspF high pass
Atha01G0053680.2 Terpenoid MDS/IspF high pass
Atha01G0017060.1 Terpenoid MVD low borderline
Atha01G0017060.2 Terpenoid MVD low borderline
Atha02G0033020.1 Terpenoid MVD medium pass
Atha03G0044900.1 Terpenoid MVD medium pass
Atha03G0044900.2 Terpenoid MVD medium pass
Atha05G0003990.1 Terpenoid MVD low borderline
Atha01G0000220.1 Terpenoid MVK low borderline
Atha01G0000220.4 Terpenoid MVK low borderline
Atha01G0000220.5 Terpenoid MVK low borderline
Atha01G0000220.6 Terpenoid MVK low borderline
Atha01G0000220.7 Terpenoid MVK low borderline
Atha02G0010230.1 Terpenoid MVK low borderline