PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BAampscaffold_60200070 Flavonoid 4CL medium pass
BAampscaffold_60200540 Flavonoid 4CL medium pass
BAampscaffold_70203430 Flavonoid 4CL medium pass
BAampscaffold_80226300 Flavonoid 4CL medium pass
BAampscaffold_90235870 Flavonoid 4CL medium pass
BAampscaffold_90238060 Flavonoid 4CL medium pass
BAampscaffold_90239060 Flavonoid 4CL low borderline
BAampscaffold_90241240 Flavonoid 4CL low borderline
BAampscaffold_10002370 Flavonoid ANR low borderline
BAampscaffold_130068330 Flavonoid ANR low borderline
BAampscaffold_130069680 Flavonoid ANR medium borderline
BAampscaffold_30133700 Flavonoid ANR medium borderline
BAampscaffold_50170240 Flavonoid ANR medium borderline
BAampscaffold_60179000 Flavonoid ANR medium borderline
BAampscaffold_80226990 Flavonoid ANR medium borderline
BAampscaffold_90246860 Flavonoid ANR low borderline
BAampscaffold_30136130 Flavonoid ANS/LDOX medium borderline
BAampscaffold_110039940 Flavonoid C4H medium borderline
BAampscaffold_20113000 Flavonoid C4H medium borderline
BAampscaffold_20113030 Flavonoid C4H medium borderline
BAampscaffold_20113050 Flavonoid C4H medium borderline
BAampscaffold_30123320 Flavonoid C4H low borderline
BAampscaffold_30126360 Flavonoid C4H low borderline
BAampscaffold_30136620 Flavonoid C4H low borderline
BAampscaffold_50154520 Flavonoid C4H low borderline
BAampscaffold_50171560 Flavonoid C4H medium pass
BAampscaffold_60188730 Flavonoid C4H medium borderline
BAampscaffold_60198730 Flavonoid C4H medium borderline
BAampscaffold_90245100 Flavonoid C4H low borderline
BAampscaffold_100023820 Flavonoid CHI low borderline
BAampscaffold_20106260 Flavonoid CHI medium pass
BAampscaffold_50171970 Flavonoid CHI medium pass
BAampscaffold_90242000 Flavonoid CHI low borderline
BAampscaffold_100023320 Flavonoid CHS medium pass
BAampscaffold_100023350 Flavonoid CHS medium pass
BAampscaffold_100023360 Flavonoid CHS medium pass
BAampscaffold_100023380 Flavonoid CHS medium pass
BAampscaffold_100030080 Flavonoid CHS medium pass
BAampscaffold_100030110 Flavonoid CHS medium pass
BAampscaffold_100030120 Flavonoid CHS medium pass
BAampscaffold_100030160 Flavonoid CHS medium pass
BAampscaffold_100030210 Flavonoid CHS medium pass
BAampscaffold_100030230 Flavonoid CHS medium pass
BAampscaffold_100030290 Flavonoid CHS medium pass
BAampscaffold_110036110 Flavonoid CHS medium pass
BAampscaffold_110036120 Flavonoid CHS medium pass
BAampscaffold_110036130 Flavonoid CHS medium pass
BAampscaffold_110037850 Flavonoid CHS low borderline
BAampscaffold_110038300 Flavonoid CHS medium pass
BAampscaffold_120046500 Flavonoid CHS medium pass