Barbula amplexifolia (barbula_amplexifolia)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 26.05% Terpenoid pathway 22.0% Alkaloid pathway 19.1% Flavonoid pathway 15.48% Rosmarinic acid pathway 11.72% Steroid pathway 5.64%

Family Distribution

691 Candidate Genes

C4H 6.85% POD 5.63% C3'H/CYP98A 5.57% BAHD 5.38% PAL 4.95% 4CL 4.4% CYP76 4.16% NMT 3.61%

Other Families 59.45%

More Families (95)

STR 44 2.69% IFS 41 2.51% PYKS 38 2.32% F3'H/CYP75B 38 2.32% DWF4/CYP90B1 35 2.14% F3H 34 2.08% IFR 33 2.02% BR6OX2/CYP85A2 32 1.96% GS 30 1.83% T3O 27 1.65% UFGT 27 1.65% CHS 27 1.65% UGT 26 1.59% 7DLGT 25 1.53% CODM/T6ODM 23 1.41% IO 22 1.35% CYP71 22 1.35% SMT1/SMT2/SMT3 21 1.28% CAD 20 1.22% G8O/G8H 19 1.16% TRI/TRII 15 0.92% CAS 15 0.92% H6H 14 0.86% SLS 13 0.8% T16H 13 0.8% F3'5'H/CYP75A 13 0.8% RAS 13 0.8% HCT 12 0.73% COMT 12 0.73% CSE 10 0.61% F5H/CYP84A 10 0.61% CYP90D1 10 0.61% SGD 9 0.55% CCR 9 0.55% LAC 9 0.55% PMT 8 0.49% 7DLH 8 0.49% ANR 8 0.49% CPR 8 0.49% BR6OX1/CYP85A1 8 0.49% CYP80B1 7 0.43% 8HGO 7 0.43% COR 7 0.43% FNS 7 0.43% SQS/FDFT1 7 0.43% CPD/CYP90A1 7 0.43% CNMT 6 0.37% MPO 6 0.37% 16OMT 6 0.37% LAMT 6 0.37% TAT 5 0.31% SQE 5 0.31% AACT 5 0.31% NCS 4 0.24% TDC 4 0.24% CHI 4 0.24% DFR 4 0.24% ROT3/CYP90C1 4 0.24% DWF5 4 0.24% GGPPS 4 0.24% BBE 3 0.18% FLS 3 0.18% DET2 3 0.18% MVK 3 0.18% MVD 3 0.18% ADC 2 0.12% CYP719 2 0.12% TYDC_DDC 2 0.12% 6OMT_4OMT_SOMT 2 0.12% CCoAOMT 2 0.12% CYP51G1 2 0.12% DWF1 2 0.12% HYD1 2 0.12% SMO1/SMO2 2 0.12% MDS/IspF 2 0.12% HMGR 2 0.12% DXS 2 0.12% HDS/IspG 2 0.12% DXR 2 0.12% HDR/IspH 2 0.12% MCT/IspD 2 0.12% FPPS 2 0.12% XMT_MXMT_DXMT 1 0.06% ISY 1 0.06% GES 1 0.06% ANS/LDOX 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF7 1 0.06% FK 1 0.06% PMK 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06% TPS 1 0.06% IDI 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	180	12	POD (89)	View species results
Terpenoid pathway	152	19	BAHD (64)	View species results
Alkaloid pathway	132	19	PYKS (28)	View species results
Flavonoid pathway	107	11	PAL (27)	View species results
Rosmarinic acid pathway	81	7	PAL (27)	View species results
Steroid pathway	39	12	CAS (13)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	604	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	113	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
BAampscaffold_100009940	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
BAampscaffold_100012100	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
BAampscaffold_100012130	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
BAampscaffold_100013010	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
BAampscaffold_100015040	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
BAampscaffold_100016920	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
BAampscaffold_100017970	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
BAampscaffold_100018400	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
BAampscaffold_10005010	Alkaloid	NMT	low	borderline	NMT__00040__sp_Q84WW6_ASHH1_ARATH
BAampscaffold_110033210	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
BAampscaffold_110034110	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
BAampscaffold_110037970	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
BAampscaffold_110043130	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BAampscaffold_120045950	Alkaloid	NMT	medium	pass	NMT__00025__sp_P93831_CLF_ARATH
BAampscaffold_120050420	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
BAampscaffold_120051280	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
BAampscaffold_130067870	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
BAampscaffold_130068200	Alkaloid	NMT	low	borderline	NMT__00017__sp_F4K1J4_ATXR7_ARATH
BAampscaffold_130070420	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
BAampscaffold_140078030	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BAampscaffold_140080180	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
BAampscaffold_140080260	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BAampscaffold_140080270	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BAampscaffold_150085960	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
BAampscaffold_160087600	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
BAampscaffold_160087790	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
BAampscaffold_170088940	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
BAampscaffold_20092130	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
BAampscaffold_20105570	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
BAampscaffold_20109530	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
BAampscaffold_20112850	Alkaloid	NMT	medium	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
BAampscaffold_20112860	Alkaloid	NMT	medium	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
BAampscaffold_20116580	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
BAampscaffold_250120590	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BAampscaffold_30127210	Alkaloid	NMT	low	borderline	NMT__00061__sp_Q9SAH5_PLMT_ARATH
BAampscaffold_30127220	Alkaloid	NMT	low	borderline	NMT__00061__sp_Q9SAH5_PLMT_ARATH
BAampscaffold_30128110	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
BAampscaffold_30137530	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
BAampscaffold_40139730	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
BAampscaffold_40141500	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
BAampscaffold_40143490	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
BAampscaffold_40143560	Alkaloid	NMT	medium	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
BAampscaffold_40149540	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BAampscaffold_50160570	Alkaloid	NMT	low	borderline	NMT__00020__sp_O23372_ATXR3_ARATH
BAampscaffold_50171890	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
BAampscaffold_50175060	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BAampscaffold_50175080	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BAampscaffold_60177990	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
BAampscaffold_60181120	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
BAampscaffold_60185890	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ