PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
BAampscaffold_100023320 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_100023350 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
BAampscaffold_100023360 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_100023380 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_100030080 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_100030110 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_100030120 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_100030160 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_100030210 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_100030230 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_100030290 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_110036110 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_110036120 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_110036130 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_110037850 Flavonoid CHS low borderline CHS__00004__sp_C6KI62_CHSL1_CANSA
BAampscaffold_110038300 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_120046500 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
BAampscaffold_120052790 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_20105330 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
BAampscaffold_20105340 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
BAampscaffold_40145850 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_40145880 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
BAampscaffold_60177540 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
BAampscaffold_90237880 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_90237890 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_90237900 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
BAampscaffold_90237910 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID