PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
BAampscaffold_100010160 Flavonoid F3H medium borderline
BAampscaffold_10001060 Flavonoid F3H medium borderline
BAampscaffold_100016250 Flavonoid F3H medium borderline
BAampscaffold_100017930 Flavonoid F3H low borderline
BAampscaffold_100025940 Flavonoid F3H medium borderline
BAampscaffold_10006480 Flavonoid F3H medium borderline
BAampscaffold_10007350 Flavonoid F3H medium pass
BAampscaffold_10007380 Flavonoid F3H low borderline
BAampscaffold_110033540 Flavonoid F3H low borderline
BAampscaffold_120045510 Flavonoid F3H medium borderline
BAampscaffold_120046230 Flavonoid F3H medium borderline
BAampscaffold_120047920 Flavonoid F3H medium borderline
BAampscaffold_130072530 Flavonoid F3H medium borderline
BAampscaffold_130074340 Flavonoid F3H medium borderline
BAampscaffold_20094330 Flavonoid F3H medium borderline
BAampscaffold_20096820 Flavonoid F3H medium borderline
BAampscaffold_20117250 Flavonoid F3H medium borderline
BAampscaffold_210119760 Flavonoid F3H low borderline
BAampscaffold_30122380 Flavonoid F3H medium borderline
BAampscaffold_30123210 Flavonoid F3H low borderline
BAampscaffold_30125750 Flavonoid F3H medium borderline
BAampscaffold_30128520 Flavonoid F3H medium pass
BAampscaffold_30129260 Flavonoid F3H medium borderline
BAampscaffold_30132490 Flavonoid F3H medium borderline
BAampscaffold_40148450 Flavonoid F3H medium borderline
BAampscaffold_50157370 Flavonoid F3H medium borderline
BAampscaffold_50160020 Flavonoid F3H medium borderline
BAampscaffold_60183720 Flavonoid F3H medium borderline
BAampscaffold_70207090 Flavonoid F3H medium borderline
BAampscaffold_80220160 Flavonoid F3H medium borderline
BAampscaffold_80225880 Flavonoid F3H medium pass
BAampscaffold_80229850 Flavonoid F3H medium pass
BAampscaffold_90239310 Flavonoid F3H low borderline
BAampscaffold_90245880 Flavonoid F3H medium borderline