PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.05% Terpenoid pathway 22.0% Alkaloid pathway 19.1% Flavonoid pathway 15.48% Rosmarinic acid pathway 11.72% Steroid pathway 5.64%
Family Distribution
C4H 6.85% POD 5.63% C3'H/CYP98A 5.57% BAHD 5.38% PAL 4.95% 4CL 4.4% CYP76 4.16% NMT 3.61%
Other Families 59.45%
More Families (95)
STR 44 2.69% IFS 41 2.51% PYKS 38 2.32% F3'H/CYP75B 38 2.32% DWF4/CYP90B1 35 2.14% F3H 34 2.08% IFR 33 2.02% BR6OX2/CYP85A2 32 1.96% GS 30 1.83% T3O 27 1.65% UFGT 27 1.65% CHS 27 1.65% UGT 26 1.59% 7DLGT 25 1.53% CODM/T6ODM 23 1.41% IO 22 1.35% CYP71 22 1.35% SMT1/SMT2/SMT3 21 1.28% CAD 20 1.22% G8O/G8H 19 1.16% TRI/TRII 15 0.92% CAS 15 0.92% H6H 14 0.86% SLS 13 0.8% T16H 13 0.8% F3'5'H/CYP75A 13 0.8% RAS 13 0.8% HCT 12 0.73% COMT 12 0.73% CSE 10 0.61% F5H/CYP84A 10 0.61% CYP90D1 10 0.61% SGD 9 0.55% CCR 9 0.55% LAC 9 0.55% PMT 8 0.49% 7DLH 8 0.49% ANR 8 0.49% CPR 8 0.49% BR6OX1/CYP85A1 8 0.49% CYP80B1 7 0.43% 8HGO 7 0.43% COR 7 0.43% FNS 7 0.43% SQS/FDFT1 7 0.43% CPD/CYP90A1 7 0.43% CNMT 6 0.37% MPO 6 0.37% 16OMT 6 0.37% LAMT 6 0.37% TAT 5 0.31% SQE 5 0.31% AACT 5 0.31% NCS 4 0.24% TDC 4 0.24% CHI 4 0.24% DFR 4 0.24% ROT3/CYP90C1 4 0.24% DWF5 4 0.24% GGPPS 4 0.24% BBE 3 0.18% FLS 3 0.18% DET2 3 0.18% MVK 3 0.18% MVD 3 0.18% ADC 2 0.12% CYP719 2 0.12% TYDC_DDC 2 0.12% 6OMT_4OMT_SOMT 2 0.12% CCoAOMT 2 0.12% CYP51G1 2 0.12% DWF1 2 0.12% HYD1 2 0.12% SMO1/SMO2 2 0.12% MDS/IspF 2 0.12% HMGR 2 0.12% DXS 2 0.12% HDS/IspG 2 0.12% DXR 2 0.12% HDR/IspH 2 0.12% MCT/IspD 2 0.12% FPPS 2 0.12% XMT_MXMT_DXMT 1 0.06% ISY 1 0.06% GES 1 0.06% ANS/LDOX 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF7 1 0.06% FK 1 0.06% PMK 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06% TPS 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
BAampscaffold_100015050 Phenylpropanoid CAD medium pass
BAampscaffold_100017590 Phenylpropanoid CAD low borderline
BAampscaffold_100024560 Phenylpropanoid CAD medium pass
BAampscaffold_10005010 Phenylpropanoid CAD low borderline
BAampscaffold_110036560 Phenylpropanoid CAD low borderline
BAampscaffold_120050270 Phenylpropanoid CAD low borderline
BAampscaffold_130068710 Phenylpropanoid CAD low borderline
BAampscaffold_30133700 Phenylpropanoid CAD medium borderline
BAampscaffold_40139750 Phenylpropanoid CAD low borderline
BAampscaffold_60179000 Phenylpropanoid CAD medium borderline
BAampscaffold_70204480 Phenylpropanoid CAD low borderline
BAampscaffold_70210270 Phenylpropanoid CAD medium pass
BAampscaffold_70210280 Phenylpropanoid CAD medium pass
BAampscaffold_70210330 Phenylpropanoid CAD medium pass
BAampscaffold_80224540 Phenylpropanoid CAD low borderline
BAampscaffold_80226990 Phenylpropanoid CAD medium borderline
BAampscaffold_80231750 Phenylpropanoid CAD low borderline
BAampscaffold_80234650 Phenylpropanoid CAD low borderline
BAampscaffold_90241250 Phenylpropanoid CAD medium pass
BAampscaffold_90246860 Phenylpropanoid CAD medium borderline