PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
BAampscaffold_10004600 Alkaloid 16OMT medium borderline
BAampscaffold_120053380 Alkaloid 16OMT medium borderline
BAampscaffold_20099750 Alkaloid 16OMT medium borderline
BAampscaffold_30134940 Alkaloid 16OMT medium borderline
BAampscaffold_60188690 Alkaloid 16OMT medium borderline
BAampscaffold_80230040 Alkaloid 16OMT medium borderline
BAampscaffold_30132290 Alkaloid 6OMT_4OMT_SOMT low borderline
BAampscaffold_30133030 Alkaloid 6OMT_4OMT_SOMT medium borderline
BAampscaffold_10000570 Alkaloid 7DLGT low borderline
BAampscaffold_10000620 Alkaloid 7DLGT low borderline
BAampscaffold_100019880 Alkaloid 7DLGT low borderline
BAampscaffold_100024320 Alkaloid 7DLGT low borderline
BAampscaffold_110033400 Alkaloid 7DLGT low borderline
BAampscaffold_110043650 Alkaloid 7DLGT medium pass
BAampscaffold_130065810 Alkaloid 7DLGT low borderline
BAampscaffold_130071230 Alkaloid 7DLGT medium pass
BAampscaffold_20102660 Alkaloid 7DLGT medium pass
BAampscaffold_20105390 Alkaloid 7DLGT low borderline
BAampscaffold_20113550 Alkaloid 7DLGT low borderline
BAampscaffold_30121870 Alkaloid 7DLGT medium pass
BAampscaffold_30124110 Alkaloid 7DLGT low borderline
BAampscaffold_30130130 Alkaloid 7DLGT medium pass
BAampscaffold_30135110 Alkaloid 7DLGT medium pass
BAampscaffold_40140910 Alkaloid 7DLGT low borderline
BAampscaffold_40141590 Alkaloid 7DLGT low borderline
BAampscaffold_50164000 Alkaloid 7DLGT low borderline
BAampscaffold_50173050 Alkaloid 7DLGT medium pass
BAampscaffold_80231150 Alkaloid 7DLGT low borderline
BAampscaffold_90239430 Alkaloid 7DLGT low borderline
BAampscaffold_90240340 Alkaloid 7DLGT medium pass
BAampscaffold_90240370 Alkaloid 7DLGT medium pass
BAampscaffold_90240380 Alkaloid 7DLGT medium pass
BAampscaffold_90241640 Alkaloid 7DLGT low borderline
BAampscaffold_100012650 Alkaloid 7DLH medium borderline
BAampscaffold_110036660 Alkaloid 7DLH medium borderline
BAampscaffold_120046170 Alkaloid 7DLH medium borderline
BAampscaffold_120049250 Alkaloid 7DLH medium borderline
BAampscaffold_120057840 Alkaloid 7DLH medium borderline
BAampscaffold_40152860 Alkaloid 7DLH medium borderline
BAampscaffold_90237490 Alkaloid 7DLH low borderline
BAampscaffold_90247900 Alkaloid 7DLH medium borderline
BAampscaffold_100015920 Alkaloid 8HGO medium borderline
BAampscaffold_120059170 Alkaloid 8HGO medium pass
BAampscaffold_120059390 Alkaloid 8HGO low borderline
BAampscaffold_20098850 Alkaloid 8HGO medium borderline
BAampscaffold_20104100 Alkaloid 8HGO medium borderline
BAampscaffold_70208100 Alkaloid 8HGO medium borderline
BAampscaffold_70217200 Alkaloid 8HGO medium borderline
BAampscaffold_10008830 Alkaloid ADC medium pass
BAampscaffold_30135100 Alkaloid ADC medium pass