PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
BAampscaffold_50164440 Alkaloid BBE low borderline
BAampscaffold_60197810 Alkaloid BBE low borderline
BAampscaffold_80230130 Alkaloid BBE low borderline
BAampscaffold_100011660 Alkaloid CNMT medium borderline
BAampscaffold_100023570 Alkaloid CNMT low borderline
BAampscaffold_10006900 Alkaloid CNMT low borderline
BAampscaffold_60186210 Alkaloid CNMT low borderline
BAampscaffold_60186710 Alkaloid CNMT low borderline
BAampscaffold_90245320 Alkaloid CNMT low borderline
BAampscaffold_100016250 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_10006480 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_10007350 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_110033540 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_120046230 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_120047920 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_130074340 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_20094330 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_20117250 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_210119760 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30121970 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30122380 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30123210 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30128520 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30129260 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30132490 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_30136130 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_40148450 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_60183720 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_70207090 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_80220160 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_80229850 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_90245880 Alkaloid CODM/T6ODM medium borderline
BAampscaffold_110040550 Alkaloid COR medium pass
BAampscaffold_120060850 Alkaloid COR medium pass
BAampscaffold_20107530 Alkaloid COR medium pass
BAampscaffold_30136410 Alkaloid COR medium pass
BAampscaffold_50175280 Alkaloid COR medium pass
BAampscaffold_60195380 Alkaloid COR medium pass
BAampscaffold_90247590 Alkaloid COR medium pass
BAampscaffold_20114340 Alkaloid CYP719 low borderline
BAampscaffold_80231190 Alkaloid CYP719 medium borderline
BAampscaffold_100014290 Alkaloid CYP80B1 medium borderline
BAampscaffold_120049470 Alkaloid CYP80B1 low borderline
BAampscaffold_130062470 Alkaloid CYP80B1 medium borderline
BAampscaffold_30125150 Alkaloid CYP80B1 medium borderline
BAampscaffold_30136630 Alkaloid CYP80B1 medium borderline
BAampscaffold_70208190 Alkaloid CYP80B1 medium borderline
BAampscaffold_90245130 Alkaloid CYP80B1 medium borderline
BAampscaffold_110039940 Alkaloid G8O/G8H medium borderline
BAampscaffold_120046900 Alkaloid G8O/G8H medium borderline