PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

871
Candidate Protein Records
691
Pathway-Level Records
1635
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BAampscaffold_120049310 Flavonoid IFS low borderline
BAampscaffold_120049760 Flavonoid IFS medium borderline
BAampscaffold_120052760 Flavonoid IFS low borderline
BAampscaffold_120052920 Flavonoid IFS low borderline
BAampscaffold_130066360 Flavonoid IFS low borderline
BAampscaffold_130076340 Flavonoid IFS medium borderline
BAampscaffold_20091260 Flavonoid IFS medium borderline
BAampscaffold_20092800 Flavonoid IFS low borderline
BAampscaffold_20099150 Flavonoid IFS medium borderline
BAampscaffold_20103410 Flavonoid IFS low borderline
BAampscaffold_20114560 Flavonoid IFS low borderline
BAampscaffold_20115170 Flavonoid IFS medium borderline
BAampscaffold_30125910 Flavonoid IFS medium borderline
BAampscaffold_30130020 Flavonoid IFS medium borderline
BAampscaffold_30134640 Flavonoid IFS medium borderline
BAampscaffold_40140690 Flavonoid IFS medium borderline
BAampscaffold_40140850 Flavonoid IFS medium borderline
BAampscaffold_40141260 Flavonoid IFS low borderline
BAampscaffold_40149780 Flavonoid IFS low borderline
BAampscaffold_40153210 Flavonoid IFS medium borderline
BAampscaffold_50168840 Flavonoid IFS low borderline
BAampscaffold_60186040 Flavonoid IFS medium borderline
BAampscaffold_70206190 Flavonoid IFS low borderline
BAampscaffold_70208960 Flavonoid IFS low borderline
BAampscaffold_70214510 Flavonoid IFS low borderline
BAampscaffold_80221890 Flavonoid IFS low borderline
BAampscaffold_80226330 Flavonoid IFS medium borderline
BAampscaffold_80231670 Flavonoid IFS low borderline
BAampscaffold_80232150 Flavonoid IFS medium borderline
BAampscaffold_80232270 Flavonoid IFS medium borderline
BAampscaffold_80233990 Flavonoid IFS low borderline
BAampscaffold_90237660 Flavonoid IFS low borderline
BAampscaffold_90245640 Flavonoid IFS low borderline
BAampscaffold_100011790 Flavonoid PAL high pass
BAampscaffold_100019130 Flavonoid PAL high pass
BAampscaffold_100023310 Flavonoid PAL high pass
BAampscaffold_100023340 Flavonoid PAL high pass
BAampscaffold_100023370 Flavonoid PAL high pass
BAampscaffold_100023390 Flavonoid PAL high pass
BAampscaffold_100030090 Flavonoid PAL medium pass
BAampscaffold_100030100 Flavonoid PAL high pass
BAampscaffold_100030130 Flavonoid PAL medium pass
BAampscaffold_100030140 Flavonoid PAL high pass
BAampscaffold_100030220 Flavonoid PAL high pass
BAampscaffold_100030300 Flavonoid PAL high pass
BAampscaffold_130072330 Flavonoid PAL high pass
BAampscaffold_20115090 Flavonoid PAL high pass
BAampscaffold_20118280 Flavonoid PAL high pass
BAampscaffold_20118320 Flavonoid PAL high pass
BAampscaffold_40140830 Flavonoid PAL high pass