PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
BAampscaffold_100017930 Alkaloid H6H low borderline
BAampscaffold_100025940 Alkaloid H6H medium borderline
BAampscaffold_10007380 Alkaloid H6H medium pass
BAampscaffold_120045510 Alkaloid H6H medium borderline
BAampscaffold_130072530 Alkaloid H6H medium borderline
BAampscaffold_20096820 Alkaloid H6H medium borderline
BAampscaffold_30122000 Alkaloid H6H medium pass
BAampscaffold_30125750 Alkaloid H6H medium borderline
BAampscaffold_50157370 Alkaloid H6H medium borderline
BAampscaffold_50160020 Alkaloid H6H medium borderline
BAampscaffold_90239310 Alkaloid H6H low borderline
BAampscaffold_90245870 Alkaloid H6H low borderline
BAampscaffold_10000340 Alkaloid IO medium borderline
BAampscaffold_100010970 Alkaloid IO low borderline
BAampscaffold_110033680 Alkaloid IO low borderline
BAampscaffold_110040220 Alkaloid IO medium borderline
BAampscaffold_130064730 Alkaloid IO medium borderline
BAampscaffold_130076340 Alkaloid IO medium borderline
BAampscaffold_20091260 Alkaloid IO medium borderline
BAampscaffold_20099150 Alkaloid IO medium borderline
BAampscaffold_20113030 Alkaloid IO medium borderline
BAampscaffold_30125910 Alkaloid IO medium borderline
BAampscaffold_30130020 Alkaloid IO medium borderline
BAampscaffold_40140850 Alkaloid IO medium borderline
BAampscaffold_50155170 Alkaloid IO medium borderline
BAampscaffold_50166970 Alkaloid IO medium borderline
BAampscaffold_50166980 Alkaloid IO medium borderline
BAampscaffold_60180940 Alkaloid IO medium borderline
BAampscaffold_60188730 Alkaloid IO high pass
BAampscaffold_70206260 Alkaloid IO medium borderline
BAampscaffold_70206580 Alkaloid IO medium borderline
BAampscaffold_80221640 Alkaloid IO medium borderline
BAampscaffold_80229450 Alkaloid IO low borderline
BAampscaffold_90247810 Alkaloid IO medium borderline
BAampscaffold_40145650 Alkaloid ISY medium pass
BAampscaffold_20092540 Alkaloid LAMT medium borderline
BAampscaffold_30121600 Alkaloid LAMT medium borderline
BAampscaffold_30134660 Alkaloid LAMT medium pass
BAampscaffold_30134670 Alkaloid LAMT medium borderline
BAampscaffold_50176450 Alkaloid LAMT medium pass
BAampscaffold_80232400 Alkaloid LAMT low borderline
BAampscaffold_100022320 Alkaloid MPO medium pass
BAampscaffold_130062740 Alkaloid MPO medium pass
BAampscaffold_130062760 Alkaloid MPO medium pass
BAampscaffold_130062800 Alkaloid MPO medium pass
BAampscaffold_130069740 Alkaloid MPO high pass
BAampscaffold_50170970 Alkaloid MPO low borderline
BAampscaffold_110037220 Alkaloid NCS low borderline
BAampscaffold_20118580 Alkaloid NCS low borderline
BAampscaffold_60198530 Alkaloid NCS low borderline