PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Bra000211.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra000390.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra000391.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra000558.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra000572.1-P Phenylpropanoid C3'H/CYP98A high pass
Bra000768.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra000769.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra000845.1-P Phenylpropanoid C3'H/CYP98A medium pass
Bra001078.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001560.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001561.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001562.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001563.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001564.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra001741.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra002747.1-P Phenylpropanoid C3'H/CYP98A high pass
Bra002774.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra003019.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra003129.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra003246.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra003247.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra003795.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra003909.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004386.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004491.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004492.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004517.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra004591.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra004714.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004918.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004921.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra004923.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra004951.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra005596.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra005811.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra005843.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra005863.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra006743.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra006829.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra006830.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra006840.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra006988.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra007259.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra007571.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra007636.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra007988.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra008199.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra008510.1-P Phenylpropanoid C3'H/CYP98A medium pass
Bra008519.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra008760.1-P Phenylpropanoid C3'H/CYP98A low borderline