PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status
Bra021636.1-P Terpenoid CYP76 medium pass
Bra021637.1-P Terpenoid CYP76 medium pass
Bra022588.1-P Terpenoid CYP76 low borderline
Bra022591.1-P Terpenoid CYP76 medium pass
Bra022802.1-P Terpenoid CYP76 medium pass
Bra022803.1-P Terpenoid CYP76 medium pass
Bra022813.1-P Terpenoid CYP76 medium borderline
Bra023464.1-P Terpenoid CYP76 medium pass
Bra023630.1-P Terpenoid CYP76 low borderline
Bra023730.1-P Terpenoid CYP76 medium pass
Bra023731.1-P Terpenoid CYP76 medium pass
Bra024002.1-P Terpenoid CYP76 low borderline
Bra024133.1-P Terpenoid CYP76 low borderline
Bra024479.1-P Terpenoid CYP76 medium borderline
Bra025188.1-P Terpenoid CYP76 medium borderline
Bra025189.1-P Terpenoid CYP76 medium borderline
Bra025190.1-P Terpenoid CYP76 medium borderline
Bra025194.1-P Terpenoid CYP76 medium borderline
Bra025351.1-P Terpenoid CYP76 medium pass
Bra025472.1-P Terpenoid CYP76 medium borderline
Bra026058.1-P Terpenoid CYP76 low borderline
Bra026508.1-P Terpenoid CYP76 medium pass
Bra026892.1-P Terpenoid CYP76 medium pass
Bra026929.1-P Terpenoid CYP76 low borderline
Bra026930.1-P Terpenoid CYP76 medium borderline
Bra026937.1-P Terpenoid CYP76 medium borderline
Bra027136.1-P Terpenoid CYP76 low borderline
Bra027137.1-P Terpenoid CYP76 medium borderline
Bra027331.1-P Terpenoid CYP76 low borderline
Bra027515.1-P Terpenoid CYP76 medium pass
Bra027898.1-P Terpenoid CYP76 low borderline
Bra028714.1-P Terpenoid CYP76 medium pass
Bra028715.1-P Terpenoid CYP76 low borderline
Bra028764.1-P Terpenoid CYP76 medium pass
Bra029048.1-P Terpenoid CYP76 medium pass
Bra029117.1-P Terpenoid CYP76 low borderline
Bra029445.1-P Terpenoid CYP76 medium borderline
Bra029852.1-P Terpenoid CYP76 medium pass
Bra030023.1-P Terpenoid CYP76 low borderline
Bra030126.1-P Terpenoid CYP76 medium borderline
Bra030216.1-P Terpenoid CYP76 medium borderline
Bra030217.1-P Terpenoid CYP76 medium borderline
Bra030246.1-P Terpenoid CYP76 low borderline
Bra030484.1-P Terpenoid CYP76 low borderline
Bra031773.1-P Terpenoid CYP76 low borderline
Bra032090.1-P Terpenoid CYP76 low borderline
Bra032114.1-P Terpenoid CYP76 medium pass
Bra032624.1-P Terpenoid CYP76 medium pass
Bra032631.1-P Terpenoid CYP76 medium pass
Bra032642.1-P Terpenoid CYP76 low borderline