PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Bra029117.1-P Steroid DWF4/CYP90B1 low borderline
Bra029120.1-P Steroid DWF4/CYP90B1 low borderline
Bra029224.1-P Steroid DWF4/CYP90B1 low borderline
Bra029361.1-P Steroid DWF4/CYP90B1 low borderline
Bra029852.1-P Steroid DWF4/CYP90B1 medium borderline
Bra029897.1-P Steroid DWF4/CYP90B1 low borderline
Bra030216.1-P Steroid DWF4/CYP90B1 low borderline
Bra030217.1-P Steroid DWF4/CYP90B1 low borderline
Bra031222.1-P Steroid DWF4/CYP90B1 low borderline
Bra032090.1-P Steroid DWF4/CYP90B1 low borderline
Bra032928.1-P Steroid DWF4/CYP90B1 low borderline
Bra033056.1-P Steroid DWF4/CYP90B1 low borderline
Bra033057.1-P Steroid DWF4/CYP90B1 low borderline
Bra034021.1-P Steroid DWF4/CYP90B1 low borderline
Bra034235.1-P Steroid DWF4/CYP90B1 low borderline
Bra034236.1-P Steroid DWF4/CYP90B1 low borderline
Bra034237.1-P Steroid DWF4/CYP90B1 low borderline
Bra034239.1-P Steroid DWF4/CYP90B1 low borderline
Bra035502.1-P Steroid DWF4/CYP90B1 low borderline
Bra036097.1-P Steroid DWF4/CYP90B1 medium borderline
Bra036203.1-P Steroid DWF4/CYP90B1 medium borderline
Bra036342.1-P Steroid DWF4/CYP90B1 low borderline
Bra036343.1-P Steroid DWF4/CYP90B1 low borderline
Bra036344.1-P Steroid DWF4/CYP90B1 low borderline
Bra036533.1-P Steroid DWF4/CYP90B1 low borderline
Bra036897.1-P Steroid DWF4/CYP90B1 low borderline
Bra037119.1-P Steroid DWF4/CYP90B1 low borderline
Bra037219.1-P Steroid DWF4/CYP90B1 low borderline
Bra038437.1-P Steroid DWF4/CYP90B1 low borderline
Bra039047.1-P Steroid DWF4/CYP90B1 low borderline
Bra039189.1-P Steroid DWF4/CYP90B1 low borderline
Bra039236.1-P Steroid DWF4/CYP90B1 low borderline
Bra039327.1-P Steroid DWF4/CYP90B1 medium borderline
Bra039329.1-P Steroid DWF4/CYP90B1 low borderline
Bra039930.1-P Steroid DWF4/CYP90B1 low borderline
Bra039931.1-P Steroid DWF4/CYP90B1 medium borderline
Bra040819.1-P Steroid DWF4/CYP90B1 low borderline
Bra040821.1-P Steroid DWF4/CYP90B1 low borderline