PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Bra015380.1-P Flavonoid F3H medium borderline
Bra015461.1-P Flavonoid F3H low borderline
Bra015513.1-P Flavonoid F3H medium borderline
Bra015514.1-P Flavonoid F3H medium borderline
Bra015515.1-P Flavonoid F3H medium borderline
Bra015675.1-P Flavonoid F3H medium borderline
Bra016708.1-P Flavonoid F3H low borderline
Bra017132.1-P Flavonoid F3H medium borderline
Bra017227.1-P Flavonoid F3H medium borderline
Bra017482.1-P Flavonoid F3H low borderline
Bra018076.1-P Flavonoid F3H medium borderline
Bra018521.1-P Flavonoid F3H low borderline
Bra018989.1-P Flavonoid F3H low borderline
Bra018990.1-P Flavonoid F3H low borderline
Bra018991.1-P Flavonoid F3H low borderline
Bra018992.1-P Flavonoid F3H low borderline
Bra019165.1-P Flavonoid F3H medium borderline
Bra019177.1-P Flavonoid F3H medium borderline
Bra019310.1-P Flavonoid F3H medium pass
Bra019350.1-P Flavonoid F3H medium borderline
Bra019485.1-P Flavonoid F3H low borderline
Bra019676.1-P Flavonoid F3H low borderline
Bra019677.1-P Flavonoid F3H low borderline
Bra019678.1-P Flavonoid F3H low borderline
Bra019734.1-P Flavonoid F3H medium borderline
Bra020890.1-P Flavonoid F3H medium borderline
Bra020909.1-P Flavonoid F3H medium borderline
Bra021081.1-P Flavonoid F3H medium borderline
Bra021118.1-P Flavonoid F3H low borderline
Bra021119.1-P Flavonoid F3H low borderline
Bra021492.1-P Flavonoid F3H medium borderline
Bra021552.1-P Flavonoid F3H low borderline
Bra021668.1-P Flavonoid F3H medium borderline
Bra021670.1-P Flavonoid F3H medium pass
Bra021671.1-P Flavonoid F3H medium pass
Bra021672.1-P Flavonoid F3H medium borderline
Bra022136.1-P Flavonoid F3H low borderline
Bra022377.1-P Flavonoid F3H medium borderline
Bra022378.1-P Flavonoid F3H medium borderline
Bra022544.1-P Flavonoid F3H low borderline
Bra022690.1-P Flavonoid F3H medium borderline
Bra023368.1-P Flavonoid F3H medium borderline
Bra023370.1-P Flavonoid F3H medium borderline
Bra023884.1-P Flavonoid F3H medium borderline
Bra024937.1-P Flavonoid F3H low borderline
Bra026008.1-P Flavonoid F3H medium borderline
Bra026122.1-P Flavonoid F3H medium borderline
Bra026693.1-P Flavonoid F3H medium borderline
Bra026695.1-P Flavonoid F3H medium borderline
Bra026757.1-P Flavonoid F3H medium borderline